Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 4.0e-69 264.6 131 100.0
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.2e-59 232.3 139 86.3
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 2.0e-44 182.6 131 73.3
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.4e-42 176.4 128 68.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 2.7e-41 172.2 131 65.6
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.0e-40 170.2 132 64.4
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.3e-40 169.9 131 67.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 3.0e-40 168.7 131 64.1
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 3.0e-40 168.7 133 65.4
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 6.6e-40 167.5 134 66.4
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 8.7e-40 167.2 131 66.4
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.1e-39 166.8 131 64.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.5e-39 166.4 135 67.4
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.3e-39 165.2 131 63.4
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 3.3e-39 165.2 132 62.9
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 5.6e-39 164.5 133 63.2
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 5.6e-39 164.5 125 66.4
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.1e-38 162.5 132 64.4
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 2.8e-38 162.2 128 61.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 2.8e-38 162.2 135 67.4
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.6e-38 161.8 133 64.7
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 3.6e-38 161.8 131 64.1
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 4.8e-38 161.4 131 64.9
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 4.8e-38 161.4 135 65.9
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.4e-37 159.8 134 62.7
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 3.1e-37 158.7 131 63.4
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 3.1e-37 158.7 131 64.1
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 4.0e-37 158.3 131 58.8
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 5.3e-37 157.9 131 60.3
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.9e-37 157.5 129 60.5
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 6.9e-37 157.5 131 63.4
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 6.9e-37 157.5 131 64.1
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.9e-37 157.5 132 63.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.9e-37 157.5 132 63.6
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 9.0e-37 157.1 131 64.1
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 9.0e-37 157.1 131 64.1
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 9.0e-37 157.1 131 64.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 9.0e-37 157.1 132 65.2
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.2e-36 156.8 131 62.6
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-36 156.8 132 64.4
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.2e-36 156.8 128 59.4
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.5e-36 156.4 132 63.6
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.0e-36 156.0 127 62.2
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.0e-36 156.0 125 64.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 3.4e-36 155.2 128 58.6
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 4.4e-36 154.8 128 59.4
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 5.8e-36 154.5 125 64.8
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 9.9e-36 153.7 127 59.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.3e-35 153.3 133 61.7
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.3e-35 153.3 132 62.9
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.3e-35 153.3 135 63.7
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.9e-35 152.1 134 63.4
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 3.8e-35 151.8 127 59.8
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.8e-35 151.8 134 59.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.9e-34 149.4 90 75.6
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.2e-33 146.7 132 59.8
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.6e-33 146.4 134 57.5
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.6e-33 146.4 130 59.2
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.7e-33 145.6 127 59.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 3.5e-33 145.2 145 53.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 7.9e-33 144.1 126 56.3
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 6.6e-32 141.0 128 58.6
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-31 140.2 128 57.8
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.1e-31 140.2 131 55.0
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.5e-31 139.8 126 55.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.5e-31 139.8 132 56.8
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.9e-31 139.4 132 58.3
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.9e-31 139.4 128 57.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.9e-31 139.4 132 58.3
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 2.5e-31 139.0 128 57.0
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.3e-31 138.3 124 58.9
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 9.6e-31 137.1 131 57.3
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 9.6e-31 137.1 127 52.0
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-30 136.7 128 57.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 1.3e-30 136.7 127 55.9
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.3e-30 136.7 125 55.2
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.6e-30 136.3 143 53.1
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.6e-30 136.3 132 53.8
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-30 135.6 128 55.5
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.6e-30 135.2 132 59.1
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.6e-30 135.2 129 58.1
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.4e-29 132.5 132 56.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.1e-29 132.1 134 54.5
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 4.0e-29 131.7 133 53.4
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 6.9e-29 131.0 134 53.7
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 6.9e-29 131.0 131 55.0
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.2e-28 130.2 125 54.4
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.2e-28 130.2 124 55.6
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-28 129.8 129 54.3
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.0e-28 129.4 134 53.0
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 2.0e-28 129.4 130 50.8
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.4e-28 128.6 122 54.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.4e-28 128.6 127 55.1
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 7.6e-28 127.5 127 53.5
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.6e-28 127.5 132 51.5
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-27 126.7 133 51.1
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 8.4e-27 124.0 133 49.6
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 8.4e-27 124.0 131 52.7
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.4e-26 123.2 131 52.7
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.4e-26 123.2 132 50.0
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 4.2e-26 121.7 126 53.2
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 5.5e-26 121.3 137 44.5
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.1e-26 120.9 131 45.8
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 9.3e-26 120.6 133 51.1
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 2.7e-25 119.0 124 54.8
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.5e-25 118.6 131 48.1
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.3e-24 116.7 136 52.9
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.5e-23 113.2 130 50.0
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.5e-23 112.5 130 47.7
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.6e-22 109.8 133 54.1
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 2.8e-22 109.0 120 50.0
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 2.4e-21 105.9 125 50.4
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.4e-21 105.9 132 43.9
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.3e-21 104.8 131 48.1
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 6.9e-21 104.4 130 43.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.2e-20 103.6 65 72.3
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.4e-20 102.1 136 41.9
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 7.6e-20 100.9 136 39.7
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.9e-19 99.0 128 46.1
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 9.3e-18 94.0 130 40.0
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 4.6e-17 91.7 122 44.3
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 6.0e-17 91.3 119 44.5
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.1e-15 87.0 65 56.9
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 4.3e-15 85.1 94 51.1
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 4.1e-13 78.6 109 42.2
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.3e-13 78.2 56 62.5
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.5e-12 75.1 46 69.6
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 5.9e-12 74.7 124 36.3
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 2.2e-11 72.8 120 38.3
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 2.2e-11 72.8 66 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.9e-11 72.4 59 50.8
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.8e-11 72.0 135 33.3
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.4e-10 70.1 141 36.2
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.5e-10 69.3 153 31.4
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.2e-10 68.9 82 36.6
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.6e-09 66.6 62 45.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 4.6e-09 65.1 62 50.0
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.9e-09 64.3 93 41.9
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 2.3e-08 62.8 75 42.7
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.9e-07 59.7 114 30.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.5e-07 59.3 49 55.1
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.3e-07 58.5 128 33.6
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.3e-07 58.5 128 33.6


User provided reference genes

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