Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 3.5e-140 501.5 238 100.0
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 6.0e-55 218.4 108 99.1
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 3.3e-53 212.6 108 94.4
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 7.3e-53 211.5 108 92.6
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 1.2e-52 210.7 107 95.3
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 2.8e-52 209.5 108 92.6
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 3.6e-52 209.1 108 91.7
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 6.2e-52 208.4 108 92.6
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 6.2e-52 208.4 107 91.6
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 6.2e-52 208.4 108 92.6
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 8.0e-52 208.0 108 91.7
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 1.4e-51 207.2 108 91.7
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 1.8e-51 206.8 108 91.7
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 1.8e-51 206.8 108 90.7
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 1.8e-51 206.8 108 90.7
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 1.8e-51 206.8 108 91.7
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 2.3e-51 206.5 107 91.6
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 2.3e-51 206.5 108 90.7
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 3.1e-51 206.1 108 89.8
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 3.1e-51 206.1 107 91.6
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 3.1e-51 206.1 107 89.7
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 3.1e-51 206.1 108 90.7
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 6.8e-51 204.9 108 89.8
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 8.9e-51 204.5 108 88.9
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 88.9
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 1.2e-50 204.1 107 88.8
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 89.8
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 90.7
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 88.9
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 88.9
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 1.2e-50 204.1 108 88.9
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 1.5e-50 203.8 108 89.8
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 1.5e-50 203.8 108 89.8
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 1.5e-50 203.8 107 88.8
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 1.5e-50 203.8 108 88.9
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 2.0e-50 203.4 106 88.7
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 2.0e-50 203.4 106 88.7
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 2.0e-50 203.4 106 88.7
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 2.0e-50 203.4 108 89.8
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 2.6e-50 203.0 108 89.8
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.6e-50 203.0 108 88.9
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.6e-50 203.0 108 88.9
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 3.4e-50 202.6 107 89.7
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 3.4e-50 202.6 105 90.5
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 3.4e-50 202.6 106 88.7
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 4.4e-50 202.2 108 90.7
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 5.8e-50 201.8 106 87.7
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 5.8e-50 201.8 108 88.9
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 7.5e-50 201.4 108 88.9
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 7.5e-50 201.4 109 88.1
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 1.3e-49 200.7 108 87.0
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 1.7e-49 200.3 108 87.0
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 1.7e-49 200.3 108 88.9
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 2.2e-49 199.9 108 88.9
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 2.2e-49 199.9 108 87.0
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 2.9e-49 199.5 108 88.0
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 2.9e-49 199.5 108 88.9
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 2.9e-49 199.5 108 86.1
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 2.9e-49 199.5 108 86.1
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 2.9e-49 199.5 108 88.0
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 3.7e-49 199.1 108 87.0
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 6.4e-49 198.4 108 88.0
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 6.4e-49 198.4 108 87.0
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 8.3e-49 198.0 107 87.9
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 8.3e-49 198.0 108 87.0
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 1.4e-48 197.2 108 86.1
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 1.4e-48 197.2 107 86.9
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 1.4e-48 197.2 107 86.9
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 1.4e-48 197.2 108 85.2
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 1.9e-48 196.8 108 86.1
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 1.9e-48 196.8 108 87.0
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 2.4e-48 196.4 108 86.1
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 7.0e-48 194.9 108 86.1
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 7.0e-48 194.9 107 83.2
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 1.2e-47 194.1 134 73.9
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 1.2e-47 194.1 108 86.1
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 1.2e-47 194.1 108 86.1
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 1.2e-47 194.1 108 86.1
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 1.2e-47 194.1 108 86.1
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 1.2e-47 194.1 108 84.3
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 1.6e-47 193.7 108 83.3
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 1.6e-47 193.7 108 84.3
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 2.1e-47 193.4 107 83.2
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 2.1e-47 193.4 108 85.2
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 2.7e-47 193.0 108 85.2
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 3.5e-47 192.6 108 84.3
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 4.6e-47 192.2 108 84.3
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 4.6e-47 192.2 108 84.3
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 7.8e-47 191.4 108 83.3
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 1.3e-46 190.7 108 83.3
Oeu036566.1 Olea europaea HOM05D004851 ORTHO05D006091 1.5e-45 187.2 101 86.1
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 1.9e-45 186.8 97 88.7
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 4.3e-45 185.7 108 80.6
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 4.3e-45 185.7 108 80.6
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 7.3e-45 184.9 108 80.6
SalBow1G4067 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.2e-44 184.1 107 83.2
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 2.1e-44 183.3 108 82.4
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 4.7e-44 182.2 102 86.3
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 1.7e-41 173.7 107 75.7
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 1.1e-40 171.0 109 76.1
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 3.2e-40 169.5 109 72.5
SalBow1G6742 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.6e-39 165.6 108 76.9
SalBow1G7753 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.6e-39 165.6 108 76.9
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 3.9e-38 162.5 107 70.1
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 7.3e-37 158.3 87 82.8
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 8.4e-33 144.8 117 63.2
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 2.1e-31 140.2 76 90.8
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 4.7e-28 129.0 108 56.5
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 4.4e-26 122.5 108 54.6
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 4.4e-26 122.5 100 59.0
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 1.4e-24 117.5 105 56.2
HanXRQChr17g0540681 Helianthus annuus HOM05D004851 ORTHO05D006091 1.9e-24 117.1 64 89.1
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 3.3e-21 106.3 68 70.6
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 1.3e-20 104.4 108 55.6
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 5.4e-16 89.0 92 47.8
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 2.1e-15 87.0 101 40.6
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 3.5e-15 86.3 40 95.0
RcHm_v2.0_Chr3g0482781 Rosa chinensis HOM05D004851 ORTHO05D006091 4.8e-12 75.9 41 87.8
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.0e-10 70.5 38 84.2
PRCOL_00002029 Prasinoderma coloniale HOM05D004851 ORTHO05D006091 1.4e-08 64.3 100 31.0
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 4.2e-08 62.8 90 32.2


User provided reference genes

Program Settings