Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 8.6e-235 816.6 412 100.0
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.0e-147 527.3 358 77.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.5e-146 523.5 358 77.9
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.6e-124 450.3 363 68.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.3e-123 446.4 360 68.1
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.6e-122 443.0 295 76.3
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.4e-122 442.6 356 67.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 3.4e-122 442.6 297 76.8
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 6.3e-121 438.3 315 74.0
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 8.3e-121 438.0 343 70.3
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 9.1e-120 434.5 371 64.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.7e-119 433.0 365 65.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 4.5e-119 432.2 361 65.9
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.5e-119 432.2 355 67.6
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.3e-118 430.6 362 64.9
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.9e-118 429.5 339 68.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 5.0e-118 428.7 339 69.0
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 8.0e-116 421.4 333 67.9
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.0e-115 421.0 295 74.6
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.8e-115 420.2 353 64.9
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 5.2e-115 418.7 319 70.5
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-114 417.5 330 66.7
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-114 417.5 333 67.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.0e-114 416.8 347 65.4
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.7e-113 413.7 366 63.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 3.7e-113 412.5 330 66.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.9e-113 412.1 307 69.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.2e-112 409.5 362 65.2
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 5.4e-112 408.7 293 72.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.2e-111 407.5 398 60.6
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.0e-111 406.8 291 71.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-111 406.4 314 68.8
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.5e-111 406.0 339 65.2
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 7.8e-111 404.8 330 63.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.3e-110 403.3 330 62.7
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.3e-110 403.3 308 68.5
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.9e-110 402.5 341 64.2
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.9e-110 402.5 317 68.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 5.0e-110 402.1 340 64.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.0e-110 402.1 330 63.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 6.6e-110 401.7 291 71.8
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 8.6e-110 401.4 330 63.0
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.5e-109 400.6 357 61.6
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-109 400.6 330 63.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.9e-109 400.2 338 62.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 4.3e-109 399.1 330 62.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 4.3e-109 399.1 345 62.6
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 4.7e-108 395.6 344 61.3
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 8.0e-108 394.8 272 73.9
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.0e-107 394.4 329 63.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.3e-107 393.3 359 59.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 2.3e-107 393.3 311 66.9
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.0e-107 392.5 307 67.1
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 4.0e-107 392.5 293 69.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.0e-107 392.5 330 64.5
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.0e-107 392.5 316 66.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 6.8e-107 391.7 330 63.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 6.8e-107 391.7 335 63.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 8.9e-107 391.3 348 61.5
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.6e-106 389.8 293 68.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.4e-106 389.0 403 53.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.2e-105 386.7 309 65.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.9e-105 386.3 344 62.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.9e-105 386.3 293 68.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.9e-105 386.3 344 62.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 2.9e-105 386.3 294 67.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 3.7e-105 386.0 360 58.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 3.7e-105 386.0 305 65.9
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 4.9e-105 385.6 328 64.0
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.9e-105 385.6 334 63.2
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 8.3e-105 384.8 293 68.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 8.3e-105 384.8 292 68.5
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.1e-104 384.4 293 68.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.4e-104 384.0 328 63.7
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.2e-104 382.9 325 64.0
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.2e-104 382.9 293 67.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 4.1e-104 382.5 323 63.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 7.0e-104 381.7 290 67.9
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 9.2e-104 381.3 334 61.1
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.5e-103 379.4 316 63.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.5e-103 379.4 332 62.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.7e-102 377.1 297 68.4
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.9e-102 375.9 330 60.9
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.1e-101 374.4 330 60.3
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 7.3e-101 371.7 276 67.0
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 9.5e-101 371.3 283 67.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 9.5e-101 371.3 283 67.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.1e-100 370.2 291 64.9
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.8e-100 369.8 283 67.1
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 3.6e-100 369.4 283 67.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.6e-100 369.4 305 64.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.6e-100 369.4 305 63.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-100 368.6 283 66.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.2e-100 368.6 294 63.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.4e-99 367.5 305 63.3
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.4e-99 367.5 294 65.3
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.4e-99 367.5 355 56.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.3e-99 366.7 294 62.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.4e-98 362.8 288 63.9
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.8e-98 362.1 290 62.8
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.7e-97 359.4 296 61.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.4e-96 356.7 337 60.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.2e-96 354.8 362 52.5
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 4.3e-93 345.9 355 55.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.2e-90 337.8 291 62.2
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 9.9e-90 334.7 279 61.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.7e-89 332.8 310 58.1
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 4.1e-88 329.3 292 58.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 5.2e-83 312.4 279 57.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.8e-83 312.0 291 58.8
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.3e-81 307.8 221 72.9
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 4.9e-81 305.8 264 62.5
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.2e-80 303.1 257 59.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.2e-74 284.6 221 66.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.4e-74 282.7 208 70.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.9e-73 280.0 306 48.4
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.1e-72 278.1 216 66.7
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 7.1e-72 275.4 350 44.3
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 3.0e-70 270.0 198 69.2
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.5e-69 267.7 274 49.6
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 4.3e-69 266.2 235 58.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.6e-68 264.2 269 50.2
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.4e-67 260.4 271 49.8
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.1e-59 233.4 283 46.6
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.7e-57 227.6 176 64.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.5e-50 204.5 224 52.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.3e-45 186.4 206 52.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.8e-44 183.7 169 58.6
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.3e-44 182.6 199 49.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-37 161.8 124 66.9
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.4e-29 133.3 70 90.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-27 128.3 305 31.5
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.8e-27 127.9 315 29.5
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.4e-21 106.7 72 66.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 6.3e-20 102.8 275 31.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.0e-17 95.5 78 62.8
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 4.2e-16 90.1 89 48.3
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.6e-15 88.2 48 81.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.3e-14 84.3 44 86.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.4e-13 80.5 100 48.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 3.7e-12 77.0 74 45.9
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 5.5e-08 63.2 202 24.8


User provided reference genes

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