Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.8e-84 314.7 149 100.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 7.2e-75 283.9 146 91.1
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.4e-72 275.0 149 87.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 5.7e-72 274.2 146 86.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.7e-71 272.7 146 88.4
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.7e-71 272.7 146 87.0
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.2e-71 272.3 147 87.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 4.8e-71 271.2 148 84.5
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 6.3e-71 270.8 147 87.8
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.4e-70 268.9 147 86.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 4.1e-70 268.1 146 86.3
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 4.1e-70 268.1 148 87.2
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.1e-70 266.9 146 84.9
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-69 266.5 146 83.6
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.6e-69 266.2 148 86.5
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 3.5e-69 265.0 146 84.9
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 3.5e-69 265.0 142 85.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 4.5e-69 264.6 146 86.3
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 4.5e-69 264.6 146 86.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.9e-69 264.2 146 84.2
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.7e-69 263.8 146 83.6
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 7.7e-69 263.8 146 84.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.0e-68 263.5 147 83.7
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.0e-68 263.5 147 83.7
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 84.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.3e-68 263.1 147 84.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.3e-68 263.1 148 83.8
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 84.9
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.0e-68 261.2 147 85.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 8.6e-68 260.4 146 82.2
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 8.6e-68 260.4 146 82.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.1e-67 260.0 150 86.0
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.1e-67 260.0 140 86.4
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.1e-67 260.0 148 81.8
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.5e-67 259.6 148 85.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.5e-67 258.8 146 80.8
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.5e-67 258.8 146 84.2
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.5e-67 258.8 146 81.5
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.5e-67 257.7 144 82.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 9.5e-67 256.9 146 82.2
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 9.5e-67 256.9 146 85.6
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.2e-66 256.5 146 83.6
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.6e-66 255.0 150 81.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 3.6e-66 255.0 146 81.5
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 4.7e-66 254.6 146 78.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 6.1e-66 254.2 146 78.8
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.0e-65 253.4 146 82.2
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-65 252.7 146 80.1
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.8e-65 252.7 147 79.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.8e-65 252.7 146 81.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.8e-65 252.7 146 82.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 82.9
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 79.6
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 80.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 83.0
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 83.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 6.8e-65 250.8 146 79.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.8e-65 250.8 146 79.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 6.8e-65 250.8 148 81.8
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 8.9e-65 250.4 146 80.8
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 8.9e-65 250.4 148 80.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.2e-64 250.0 148 80.4
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.2e-64 250.0 137 85.4
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.2e-64 250.0 146 79.5
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 79.5
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.0e-64 249.2 146 80.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.6e-64 248.8 147 78.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.6e-64 248.8 148 78.4
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.6e-64 248.8 148 83.1
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.6e-64 248.8 146 80.8
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.4e-64 248.4 147 80.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 3.4e-64 248.4 146 80.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.4e-64 248.4 147 79.6
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.4e-64 248.1 147 79.6
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 5.7e-64 247.7 144 79.9
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 5.7e-64 247.7 146 79.5
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 7.5e-64 247.3 146 78.8
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 79.5
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.8e-63 245.4 132 87.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.8e-63 245.4 132 87.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 3.7e-63 245.0 154 77.9
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 3.7e-63 245.0 147 78.9
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 6.3e-63 244.2 150 80.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.4e-62 243.0 147 78.9
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 75.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 4.1e-62 241.5 146 76.0
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.0e-62 240.7 132 85.6
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 9.2e-62 240.4 143 74.8
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 75.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.7e-61 238.8 149 76.5
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.5e-61 238.4 146 73.3
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.5e-61 238.4 146 74.0
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 5.9e-61 237.7 146 72.6
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 5.9e-61 237.7 138 76.1
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.8e-61 237.3 146 72.6
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.3e-60 236.5 140 78.6
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.3e-60 235.7 146 74.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.9e-60 235.3 147 75.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 76.5
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 75.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.6e-60 234.2 146 76.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.6e-60 233.8 149 75.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-59 233.0 130 84.6
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.3e-59 231.9 147 70.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 9.5e-59 230.3 125 84.8
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 74.1
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.0e-57 226.9 147 74.8
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.8e-57 224.2 148 74.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.9e-57 223.8 150 73.3
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 68.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 75.5
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 73.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 73.5
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-56 222.6 147 74.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.0e-56 222.6 147 74.1
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 65.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 3.4e-56 221.9 131 74.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.2e-55 219.2 135 76.3
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 8.3e-55 217.2 150 71.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 8.3e-55 217.2 150 71.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.3e-55 217.2 115 85.2
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.2e-54 215.3 132 79.5
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 7.0e-54 214.2 150 72.7
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 9.2e-54 213.8 150 71.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 9.2e-54 213.8 150 71.3
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.6e-53 213.0 153 70.6
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.6e-53 213.0 146 65.1
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.0e-53 212.6 146 68.5
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.5e-53 211.8 150 68.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.5e-53 211.8 150 68.7
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 5.0e-52 208.0 124 79.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 4.3e-51 204.9 148 68.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 4.3e-51 204.9 148 68.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 4.3e-51 204.9 148 68.9
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 4.3e-51 204.9 134 74.6
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 2.1e-50 202.6 146 67.1
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.8e-50 202.2 151 65.6
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.4e-49 199.9 147 65.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.9e-43 179.5 146 63.7
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 7.3e-43 177.6 146 67.1
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-41 173.3 146 63.7
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-39 166.8 101 75.2
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 3.7e-39 165.2 101 79.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.0e-36 157.1 97 80.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 9.5e-35 150.6 150 54.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 8.1e-34 147.5 122 59.8
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.0e-24 116.3 166 42.2
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.4e-24 115.5 126 51.6
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.3e-23 113.6 67 79.1
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 3.8e-23 112.1 75 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 9.6e-19 97.4 90 51.1
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 3.0e-12 75.9 39 82.1
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.6e-10 70.1 53 50.9
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 8.4e-07 57.8 71 39.4


User provided reference genes

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