Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.2e-269 932.6 463 100.0
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 6.4e-263 910.2 463 97.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.8e-258 894.8 463 95.9
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.2e-221 773.1 464 82.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.0e-216 755.7 455 80.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 2.6e-216 755.4 463 79.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 5.9e-216 754.2 465 79.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.7e-215 752.7 462 79.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.2e-214 748.4 463 79.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 4.2e-214 748.0 489 76.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.7e-213 745.3 462 78.6
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.3e-212 742.3 462 78.1
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 8.8e-212 740.3 463 78.4
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.5e-211 739.6 462 77.7
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.0e-211 739.2 461 78.1
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 3.3e-211 738.4 462 78.4
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 7.4e-211 737.3 463 77.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 9.7e-211 736.9 462 78.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.3e-210 736.5 450 79.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 2.2e-210 735.7 457 79.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.7e-210 734.9 460 78.3
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 6.3e-210 734.2 460 78.0
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.4e-209 733.0 463 77.3
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.4e-209 732.3 464 77.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.3e-209 731.1 453 77.0
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 9.1e-209 730.3 462 77.5
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.0e-208 729.2 457 77.0
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.6e-208 728.8 457 77.5
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.6e-208 728.8 464 78.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-207 726.5 457 76.8
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-207 726.5 457 76.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.7e-207 726.1 460 77.0
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.9e-207 725.3 476 75.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-206 723.4 437 80.5
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-206 723.4 437 80.5
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.4e-206 723.0 453 76.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.4e-206 723.0 452 77.4
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.2e-206 721.8 437 79.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 4.2e-206 721.5 437 80.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 7.2e-206 720.7 448 78.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 9.4e-206 720.3 447 79.2
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.6e-205 719.5 452 77.0
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.1e-205 719.2 453 75.9
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.1e-205 719.2 454 75.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.7e-205 718.8 459 76.3
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.7e-205 718.8 448 76.6
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 2.7e-205 718.8 447 77.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.6e-205 718.4 452 77.0
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 4.7e-205 718.0 448 78.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 4.7e-205 718.0 457 76.8
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 6.1e-205 717.6 442 79.6
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.9e-205 717.2 437 79.4
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.9e-205 717.2 437 79.4
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-204 716.5 464 75.9
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-204 716.1 449 77.1
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-204 714.5 447 77.6
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.1e-204 714.5 467 74.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 8.8e-204 713.8 432 79.4
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-203 713.0 431 79.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-203 713.0 450 76.2
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-203 712.2 448 76.8
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.3e-203 711.8 465 76.3
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.4e-203 711.4 437 79.4
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.4e-203 711.4 442 78.3
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.8e-202 708.8 455 76.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.8e-202 708.8 466 75.1
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 3.7e-202 708.4 464 75.0
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 6.3e-202 707.6 445 76.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 8.2e-202 707.2 445 76.0
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.2e-202 707.2 469 74.4
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 8.2e-202 707.2 458 74.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.4e-201 705.7 432 78.9
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 3.1e-201 705.3 460 75.0
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.1e-201 704.9 469 74.0
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.1e-201 704.9 443 77.2
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.2e-200 703.4 451 75.4
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.5e-200 703.0 443 75.6
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.5e-200 701.4 444 76.1
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 5.9e-200 701.0 452 75.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.2e-199 699.1 443 75.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.9e-199 698.7 435 76.8
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.8e-199 698.4 442 76.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 8.5e-199 697.2 458 74.7
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.9e-198 696.0 462 73.6
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.9e-198 696.0 463 73.4
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.9e-198 696.0 442 76.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 9.4e-198 693.7 449 75.3
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.2e-197 693.3 461 73.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.1e-197 692.6 431 77.7
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.7e-197 692.2 450 75.1
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 6.1e-197 691.0 446 74.7
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 6.1e-197 691.0 458 73.4
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 8.0e-197 690.6 462 74.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.3e-196 689.1 466 73.0
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 4.0e-196 688.3 442 75.1
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 6.7e-196 687.6 436 75.7
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.1e-195 686.8 444 75.5
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.5e-195 686.4 439 75.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 2.0e-195 686.0 429 76.9
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.6e-195 685.6 447 74.9
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 4.4e-195 684.9 424 76.4
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.4e-193 679.9 463 72.4
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.4e-193 679.1 446 74.4
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.4e-193 679.1 453 74.4
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.1e-193 678.3 448 74.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.6e-192 675.6 418 78.5
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.2e-191 672.5 443 73.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 3.8e-191 671.8 429 75.3
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 3.8e-191 671.8 446 72.4
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 8.5e-191 670.6 413 78.9
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.5e-190 669.8 429 74.8
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.5e-190 669.8 435 74.3
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 7.2e-190 667.5 407 79.4
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 9.4e-190 667.2 429 74.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.6e-189 666.4 459 70.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 4.7e-189 664.8 451 71.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.0e-189 664.1 427 74.5
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.0e-189 664.1 427 74.5
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.0e-188 662.1 444 72.1
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.2e-187 660.2 429 73.2
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 2.6e-187 659.1 429 73.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.6e-187 659.1 430 73.7
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 2.6e-187 659.1 423 75.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.4e-187 658.3 425 74.4
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 5.7e-187 657.9 429 73.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.5e-187 657.5 410 76.8
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.3e-186 656.8 460 69.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-186 656.8 462 67.3
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.7e-186 656.4 423 75.4
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.1e-185 653.7 424 73.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 5.9e-184 647.9 465 68.8
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 7.7e-184 647.5 461 69.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 9.4e-182 640.6 461 69.0
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.7e-181 638.3 390 80.0
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 6.3e-178 627.9 391 78.0
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 9.2e-177 624.0 373 79.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.7e-176 620.9 468 65.8
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-174 616.3 389 76.3
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.5e-174 615.9 443 68.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.8e-173 612.5 365 79.5
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-170 603.6 381 77.4
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.0e-168 596.3 468 64.5
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 1.2e-163 580.5 386 73.8
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 7.8e-160 567.8 460 63.7
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.9e-150 536.6 429 61.5
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-143 512.7 461 59.7
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.1e-141 504.6 428 57.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 5.2e-140 501.9 419 59.7
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.8e-136 488.0 467 56.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.6e-131 471.5 429 56.2
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.8e-125 453.0 306 70.6
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.1e-118 431.0 287 72.1
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 9.3e-113 411.4 435 49.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.2e-105 386.0 271 67.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 7.2e-105 385.2 444 45.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 9.3e-105 384.8 236 76.7
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 7.9e-104 381.7 231 77.5
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.3e-98 364.4 424 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.0e-95 353.2 400 47.2
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.0e-74 285.0 272 58.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.7e-69 267.7 161 79.5
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 7.8e-59 232.3 154 76.0
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.7e-45 186.8 113 77.9
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.4e-44 184.1 450 31.3
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-43 181.8 127 68.5
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.0e-38 164.5 93 81.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 2.4e-36 157.5 459 29.2
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 8.6e-26 122.5 84 67.9
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.8e-22 109.8 75 68.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 8.7e-18 95.9 60 76.7
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 5.4e-12 76.6 60 61.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-07 62.4 198 26.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.8e-07 61.6 196 27.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.0e-07 60.5 43 65.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 9.0e-07 59.3 43 62.8
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 9.0e-07 59.3 397 24.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.0e-06 58.2 197 25.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-06 57.8 199 26.6
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.4e-06 57.4 264 22.7
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.8e-06 56.6 148 30.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 9.9e-06 55.8 265 23.8


User provided reference genes

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