Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 3.1e-131 471.9 243 100.0
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 8.0e-47 191.4 123 78.9
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 3.9e-46 189.1 123 78.0
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 2.0e-45 186.8 122 75.4
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.3e-45 186.0 123 74.0
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 3.3e-45 186.0 125 73.6
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.4e-45 185.7 121 75.2
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.3e-44 184.1 126 71.4
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-44 184.1 122 73.0
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 2.2e-44 183.3 123 74.0
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.8e-44 183.0 123 74.0
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 6.3e-44 181.8 123 73.2
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 6.3e-44 181.8 123 74.8
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.3e-44 181.8 133 67.7
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 8.2e-44 181.4 123 72.4
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.1e-43 181.0 123 72.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.1e-43 181.0 123 74.0
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.1e-43 181.0 123 72.4
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.8e-43 180.3 123 71.5
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.4e-43 179.9 123 72.4
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.4e-43 179.9 133 66.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 4.1e-43 179.1 123 72.4
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 4.1e-43 179.1 123 71.5
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.1e-43 179.1 124 69.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 5.3e-43 178.7 134 66.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 5.3e-43 178.7 123 71.5
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 5.3e-43 178.7 123 69.9
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 7.0e-43 178.3 123 71.5
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 7.0e-43 178.3 123 69.9
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.2e-42 177.6 124 72.6
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.6e-42 177.2 124 72.6
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.6e-42 177.2 123 70.7
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.0e-42 176.8 123 71.5
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.0e-42 176.8 121 70.2
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 5.9e-42 175.3 123 71.5
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.9e-42 175.3 123 69.1
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 5.9e-42 175.3 123 69.1
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 7.7e-42 174.9 121 70.2
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 7.7e-42 174.9 123 70.7
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 7.7e-42 174.9 123 71.5
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.0e-41 174.5 123 68.3
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.0e-41 174.5 123 69.9
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.0e-41 174.5 124 67.7
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.0e-41 174.5 123 69.1
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.3e-41 174.1 123 71.5
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.3e-41 174.1 122 68.9
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.7e-41 173.7 123 69.1
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 2.2e-41 173.3 124 67.7
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.9e-41 172.9 122 69.7
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.9e-41 172.9 123 68.3
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 2.9e-41 172.9 123 69.1
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 2.9e-41 172.9 123 69.1
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.8e-41 172.6 123 68.3
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.8e-41 172.6 156 57.7
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.8e-41 172.6 123 69.9
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.8e-41 172.6 125 71.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-41 172.6 125 71.2
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 3.8e-41 172.6 123 67.5
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 3.8e-41 172.6 121 68.6
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 5.0e-41 172.2 123 67.5
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 5.0e-41 172.2 123 69.1
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 5.0e-41 172.2 123 69.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 5.0e-41 172.2 123 67.5
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 6.5e-41 171.8 124 70.2
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 6.5e-41 171.8 123 67.5
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 6.5e-41 171.8 123 69.9
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 6.5e-41 171.8 123 69.9
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 8.5e-41 171.4 123 68.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 8.5e-41 171.4 123 70.7
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 8.5e-41 171.4 123 68.3
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 8.5e-41 171.4 125 70.4
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.5e-40 170.6 123 66.7
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.9e-40 170.2 123 67.5
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-40 170.2 123 66.7
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-40 170.2 125 70.4
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.9e-40 170.2 123 67.5
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.9e-40 170.2 123 68.3
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.5e-40 169.9 124 69.4
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 2.5e-40 169.9 123 66.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 3.2e-40 169.5 125 69.6
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 4.2e-40 169.1 123 67.5
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 4.2e-40 169.1 123 68.3
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 4.2e-40 169.1 123 68.3
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.2e-40 168.3 124 70.2
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.4e-40 167.9 123 65.9
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 9.4e-40 167.9 126 64.3
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.2e-39 167.5 123 66.7
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.2e-39 167.5 124 67.7
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.6e-39 167.2 125 68.8
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.6e-39 167.2 123 67.5
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.1e-39 166.8 124 67.7
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 2.7e-39 166.4 124 66.9
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 3.6e-39 166.0 125 68.0
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.6e-39 166.0 125 65.6
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.4e-38 164.1 124 66.1
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.8e-38 163.7 125 64.8
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.2e-38 162.2 125 64.0
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 5.2e-38 162.2 116 69.8
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 6.8e-38 161.8 124 65.3
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 8.8e-38 161.4 125 65.6
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.5e-37 160.6 124 67.7
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.4e-37 159.1 126 64.3
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 5.7e-37 158.7 116 66.4
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 7.5e-37 158.3 116 68.1
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 7.5e-37 158.3 123 61.8
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 9.7e-37 157.9 123 61.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-36 157.5 126 63.5
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 1.3e-36 157.5 126 63.5
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.3e-36 157.5 123 64.2
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.3e-36 157.5 125 65.6
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-36 157.1 116 66.4
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-36 156.8 129 61.2
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 2.8e-36 156.4 118 69.5
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 3.7e-36 156.0 126 62.7
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 4.8e-36 155.6 124 62.9
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 6.3e-36 155.2 128 61.7
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 6.3e-36 155.2 128 61.7
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 8.3e-36 154.8 125 62.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 8.3e-36 154.8 124 66.1
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 8.3e-36 154.8 123 60.2
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.1e-35 154.5 126 62.7
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.8e-35 153.7 125 63.2
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.8e-35 153.7 125 63.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 4.1e-35 152.5 127 59.8
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 4.1e-35 152.5 127 59.8
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 5.3e-35 152.1 132 59.8
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 9.1e-35 151.4 125 62.4
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.6e-34 150.6 125 61.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.0e-34 150.2 125 63.2
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.0e-34 150.2 123 57.7
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.7e-34 149.8 125 63.2
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.7e-34 149.8 125 61.6
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.7e-34 149.8 116 63.8
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.7e-34 149.8 125 61.6
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 5.9e-34 148.7 125 60.0
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-33 147.5 115 61.7
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.2e-33 146.7 127 58.3
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.5e-33 144.8 109 63.3
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.9e-32 143.7 125 60.8
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-32 143.7 115 60.0
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 3.2e-32 142.9 121 60.3
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.2e-32 142.5 105 63.8
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 9.4e-32 141.4 125 57.6
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 9.4e-32 141.4 122 59.0
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 2.7e-31 139.8 122 59.0
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 2.7e-31 139.8 122 59.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.7e-31 139.8 122 54.9
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 3.6e-31 139.4 124 58.9
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 8.0e-31 138.3 123 54.5
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.3e-30 136.7 109 67.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 8.8e-30 134.8 122 57.4
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.2e-29 134.4 113 60.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 5.7e-29 132.1 122 55.7
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.3e-28 131.0 98 66.3
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 8.3e-28 128.3 123 53.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 2.4e-27 126.7 131 48.9
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 9.1e-27 124.8 132 46.2
Cfa005627 Carpinus fangiana HOM05D000145 ORTHO05D000115 2.7e-26 123.2 76 85.5
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 6.6e-25 118.6 122 47.5
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-24 117.9 88 64.8
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.1e-23 113.6 132 46.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.7e-21 105.5 106 56.6
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.4e-19 100.9 123 47.2
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-17 94.4 121 43.8
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 5.6e-16 89.0 58 65.5
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 7.3e-16 88.6 68 66.2
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 2.1e-15 87.0 116 43.1
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.8e-13 79.0 54 63.0
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 3.6e-07 59.7 40 60.0


User provided reference genes

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