Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 0.0e+00 2352.4 1191 100.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 0.0e+00 2154.4 1191 92.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 0.0e+00 1484.9 1218 66.3
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 0.0e+00 1387.1 1209 63.6
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.5e-210 736.9 1299 41.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 8.3e-198 695.3 1256 40.7
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.4e-197 694.5 1254 41.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.8e-193 680.2 1248 40.0
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.1e-192 676.8 1254 40.5
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 4.0e-192 676.4 1260 39.2
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.4e-184 651.4 1218 39.5
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 8.9e-184 648.7 1249 39.5
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.2e-181 640.2 1302 38.2
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.3e-179 634.8 1251 38.0
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.1e-177 627.5 1340 37.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.8e-176 624.4 1255 37.4
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.8e-176 624.4 1302 37.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.2e-174 617.5 1222 38.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 9.0e-168 595.5 1297 37.2
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 8.7e-163 578.9 1287 36.9
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.5e-162 577.4 1294 36.9
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 4.9e-158 563.1 1180 36.9
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 9.3e-157 558.9 1323 36.2
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.5e-156 557.0 1223 37.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.0e-155 553.9 1219 36.8
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.7e-155 552.4 513 59.6
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.8e-153 547.4 1228 36.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.4e-152 545.0 998 40.6
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 7.6e-143 512.7 1179 36.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.0e-142 512.3 1224 35.8
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.5e-142 509.6 1266 36.7
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.5e-141 506.5 1232 35.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 9.3e-141 505.8 1227 36.3
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.4e-136 491.9 1217 35.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.8e-134 483.8 907 39.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.6e-132 477.2 937 40.8
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.0e-126 459.1 1216 34.0
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.8e-121 440.3 1216 33.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.7e-108 397.9 1225 31.5
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 5.2e-107 393.7 952 35.1
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 9.5e-101 372.9 1247 30.0
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.7e-100 371.3 991 34.1
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 8.0e-100 369.8 962 33.6
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 5.9e-95 353.6 1008 32.3
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.7e-92 344.0 1256 29.5
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 7.5e-90 336.7 1252 30.0
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.7e-89 335.5 1218 30.3
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.3e-86 325.1 1220 30.0
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 8.6e-86 323.2 1074 31.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-85 322.8 1260 29.5
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-85 322.8 1260 29.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.0e-82 312.0 1265 30.5
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 9.8e-82 309.7 1074 30.6
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.7e-81 308.9 853 34.9
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 6.6e-78 297.0 1042 29.5
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 2.1e-76 292.0 1124 29.7
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 3.6e-76 291.2 1258 27.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.1e-75 288.1 1249 28.5
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-74 285.8 538 40.0
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.2e-72 278.1 1237 28.2
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.2e-71 276.2 1014 29.7
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 5.1e-70 270.8 1237 28.7
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 8.6e-70 270.0 862 32.1
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 8.9e-67 260.0 1254 27.6
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.2e-64 251.5 939 30.7
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.1e-63 248.8 1306 26.3
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.6e-62 243.4 1278 26.8
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.5e-58 232.6 1186 27.7
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 3.5e-55 221.5 990 28.4
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.0e-54 218.4 1251 26.1
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.8e-52 211.8 1241 27.1
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 8.1e-52 210.3 1247 25.8
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.5e-50 206.1 481 35.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 7.6e-50 203.8 1037 29.5
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 7.6e-50 203.8 1001 27.7
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.2e-48 198.0 994 27.3
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.2e-47 196.4 1001 27.5
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 7.9e-47 193.7 1016 29.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 7.9e-47 193.7 1234 24.6
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.0e-46 193.4 1003 26.4
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.3e-46 192.2 1005 27.8
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.1e-44 185.7 175 60.0
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.8e-44 185.3 965 27.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.8e-44 185.3 1018 28.8
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.9e-41 174.5 429 35.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 5.5e-40 171.0 1026 27.1
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 3.5e-39 168.3 1340 25.4
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 3.0e-38 165.2 1331 24.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 9.6e-37 160.2 927 25.5
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.5e-34 151.4 1268 25.2
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 5.5e-32 144.4 1372 24.6
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.1e-31 142.5 503 30.2
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 2.7e-31 142.1 1168 24.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 2.7e-31 142.1 900 25.4
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.3e-30 139.0 1189 25.6
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 3.0e-30 138.7 499 29.3
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.7e-29 134.4 400 33.2
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.3e-28 133.3 1347 24.8
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.1e-27 128.6 1226 24.1
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 9.0e-27 127.1 650 26.2
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 2.0e-26 125.9 88 68.2
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.4e-26 125.2 1189 25.1
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 6.5e-25 120.9 1075 25.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 8.5e-25 120.6 506 27.3
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.2e-24 117.5 1165 23.3
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-21 109.8 747 25.0
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.3e-20 106.7 277 36.1
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 4.1e-19 101.7 919 24.9
QL09p006824 Quercus lobata HOM05D000005 ORTHO05D000012 6.9e-19 100.9 153 42.5
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.5e-18 99.8 554 26.9
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 1.0e-17 97.1 270 33.3
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 6.5e-17 94.4 1070 23.1
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 3.2e-16 92.0 443 27.3
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 2.1e-15 89.4 275 32.4
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 6.1e-15 87.8 985 23.1
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 5.1e-14 84.7 1151 22.5
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 8.8e-14 84.0 395 26.6
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 5.7e-13 81.3 546 24.4
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 7.4e-13 80.9 953 23.9
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 6.3e-12 77.8 539 24.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.1e-11 75.5 206 30.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.1e-11 75.5 616 24.0
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 9.1e-11 73.9 528 22.7
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 9.1e-11 73.9 560 24.3
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.5e-10 73.2 222 32.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.0e-10 72.8 136 35.3
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 2.6e-10 72.4 578 23.7
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 4.5e-10 71.6 131 33.6
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 5.9e-10 71.2 319 29.8
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 7.7e-10 70.9 265 28.7
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-09 70.1 554 23.8
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.2e-09 69.3 399 28.3
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.9e-09 68.9 535 23.9
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.9e-09 68.9 535 23.9
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 2.9e-09 68.9 437 26.3
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 5.0e-09 68.2 511 26.8
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 6.5e-09 67.8 548 24.5
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 1.4e-08 66.6 302 24.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 359 27.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-08 65.9 513 24.8
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 2.5e-08 65.9 549 23.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 9.4e-08 63.9 435 25.3
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 9.4e-08 63.9 562 24.4
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 9.4e-08 63.9 562 24.4
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 9.4e-08 63.9 435 25.3
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-07 63.5 191 31.9
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.6e-07 63.2 429 24.2
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 2.7e-07 62.4 568 24.8
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 4.7e-07 61.6 681 23.3
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 4.7e-07 61.6 486 22.6
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 7.9e-07 60.8 436 24.8
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 7.9e-07 60.8 436 24.8
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 1.8e-06 59.7 366 26.5
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.8e-06 59.7 70 50.0
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.3e-06 59.3 352 27.0
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 2.3e-06 59.3 436 24.3
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.0e-06 58.9 70 48.6
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 3.9e-06 58.5 436 23.4
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 6.7e-06 57.8 442 25.1


User provided reference genes

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