Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 0.0e+00 1760.7 877 100.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 0.0e+00 1680.2 898 93.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 0.0e+00 1266.5 909 72.1
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.4e-306 1056.2 918 61.0
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 8.0e-299 1030.4 912 59.6
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 9.8e-289 996.9 920 58.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 3.0e-285 985.3 922 57.0
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.2e-283 977.6 922 56.8
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 8.9e-282 973.8 901 58.9
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.2e-281 973.4 1110 50.8
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.7e-280 969.5 920 56.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.7e-280 969.5 916 56.3
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.4e-279 965.7 893 57.8
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 9.2e-279 963.8 893 57.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.7e-278 962.2 920 56.3
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.3e-277 959.1 638 76.2
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.5e-276 956.4 883 58.8
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.1e-274 950.3 1108 49.0
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 2.4e-274 949.1 887 57.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.3e-272 943.3 861 59.5
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 7.8e-270 934.1 883 56.3
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.0e-269 932.2 883 56.2
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 8.7e-269 930.6 883 56.4
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.2e-262 910.2 907 54.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.1e-255 887.1 919 52.6
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.9e-255 886.3 1112 47.5
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 7.9e-254 880.9 895 52.2
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 4.3e-252 875.2 824 57.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 7.6e-249 864.4 897 52.5
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.5e-248 861.3 896 51.8
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 4.2e-247 858.6 1114 46.1
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.5e-246 855.5 900 50.4
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.7e-244 848.2 899 51.6
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 7.4e-244 847.8 900 51.1
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.6e-244 847.4 904 50.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 8.2e-243 844.3 904 51.4
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 4.5e-241 838.6 896 52.0
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 5.8e-241 838.2 912 49.1
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.9e-240 835.9 903 51.1
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 5.0e-240 835.1 903 51.4
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.5e-236 823.5 891 51.3
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.6e-235 820.1 1096 44.2
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.3e-232 810.4 914 51.5
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.4e-231 807.0 919 49.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.4e-231 807.0 917 49.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 7.2e-231 804.7 911 49.0
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.6e-230 802.0 917 48.4
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.4e-229 800.4 902 48.2
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 3.9e-229 798.9 913 49.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 5.1e-229 798.5 1097 44.0
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 9.1e-226 787.7 916 48.0
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.9e-223 780.0 910 49.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 4.2e-223 778.9 917 47.0
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.2e-223 778.9 911 47.3
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 7.2e-223 778.1 931 46.5
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 9.4e-223 777.7 916 47.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.7e-222 775.4 917 47.3
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.8e-221 773.5 930 47.5
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 8.8e-221 771.2 913 46.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 8.8e-221 771.2 913 46.9
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.3e-220 769.2 915 46.9
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 7.4e-220 768.1 915 47.0
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.2e-219 766.5 904 48.0
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.5e-217 760.4 907 47.5
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.1e-214 750.0 900 45.8
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 6.1e-214 748.4 1051 43.6
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.7e-208 730.3 903 46.3
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 5.0e-208 728.8 917 44.9
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.4e-205 720.7 645 58.3
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 3.4e-204 716.1 905 47.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 2.2e-203 713.4 808 49.6
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.7e-203 712.6 895 46.0
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.5e-201 706.1 1110 39.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.5e-199 699.9 913 45.3
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 8.0e-198 694.9 913 45.8
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.8e-197 691.8 908 44.7
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.1e-194 681.4 855 45.3
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 4.2e-191 672.5 900 45.2
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-190 669.5 804 46.0
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 4.7e-190 669.1 1083 39.1
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.4e-188 662.9 865 44.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.7e-188 662.1 908 43.5
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.8e-186 657.1 782 49.0
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.4e-186 656.8 806 47.8
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.2e-186 656.4 866 45.5
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.6e-185 654.1 1062 40.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.9e-175 620.5 1016 38.6
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.1e-174 617.1 698 50.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.9e-171 606.7 977 39.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.7e-171 606.3 845 43.3
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.2e-166 591.3 493 61.5
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.7e-161 573.5 975 37.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.5e-161 573.2 525 56.6
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.2e-148 531.6 658 46.5
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 2.0e-148 530.8 559 51.3
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.4e-141 507.3 613 44.9
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 7.6e-132 475.7 617 46.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.4e-130 471.5 950 33.6
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 1.5e-127 461.5 517 49.9
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 6.9e-125 452.6 904 34.5
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.9e-122 444.5 567 46.2
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 3.3e-119 433.7 944 33.4
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 7.4e-111 406.0 960 32.9
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.7e-107 394.8 807 33.8
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.4e-106 391.7 590 39.7
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 5.3e-101 373.2 937 30.6
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.4e-93 348.6 1191 26.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.2e-90 336.3 383 49.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 5.2e-88 330.1 483 41.4
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 5.4e-85 320.1 679 36.4
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.5e-74 284.6 272 56.6
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.4e-72 278.9 919 28.3
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 3.0e-72 277.7 367 42.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.2e-70 271.6 654 30.3
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.0e-69 266.5 216 63.9
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 7.8e-68 263.1 266 57.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.3e-67 262.3 365 44.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 8.6e-67 259.6 159 76.1
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.1e-65 255.0 189 66.7
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.6e-55 221.5 196 58.7
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 5.8e-55 220.3 355 39.7
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 8.3e-54 216.5 196 57.1
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.7e-51 208.8 207 52.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.5e-50 204.9 301 42.2
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 9.9e-39 166.4 336 34.2
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.5e-34 151.8 109 66.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.3e-34 150.2 272 34.9
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 3.8e-30 137.9 492 26.6
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 4.9e-30 137.5 210 37.1
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-26 126.3 87 63.2
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.3e-22 112.8 84 60.7
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 3.8e-22 111.3 122 53.3
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.6e-20 105.9 139 45.3
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 4.6e-12 77.8 157 35.0
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 3.0e-11 75.1 56 71.4
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 3.3e-10 71.6 107 37.4
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.9e-06 58.5 42 66.7
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 2.9e-06 58.5 29 79.3


User provided reference genes

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