Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 0.0e+00 1738.0 989 100.0
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 0.0e+00 1390.2 1094 74.5
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.0e-310 1070.1 1082 61.0
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.3e-305 1053.1 1138 59.2
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.8e-289 998.4 1086 58.3
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.0e-221 773.5 986 50.8
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 6.2e-215 751.9 1080 49.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.3e-212 744.2 1080 46.8
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.3e-209 734.2 1033 48.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 8.1e-207 724.9 1093 45.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.0e-206 722.6 1044 46.5
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 7.6e-205 718.4 1084 46.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 7.1e-203 711.8 1042 47.0
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.0e-201 708.0 1027 47.5
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.8e-199 699.9 1084 45.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 6.2e-199 698.7 1090 43.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-198 698.0 1079 44.3
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-198 696.4 1084 45.5
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.6e-197 693.3 1083 47.1
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 7.6e-197 691.8 845 49.1
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 8.4e-196 688.3 1088 44.6
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.4e-195 687.6 1093 45.8
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.9e-194 681.8 1077 44.4
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 7.9e-194 681.8 1034 45.7
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.0e-193 679.9 1115 43.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.9e-193 679.5 1079 44.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.1e-192 677.9 1096 44.5
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 6.3e-191 672.2 1078 44.2
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-190 669.8 1086 44.7
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-188 664.8 1075 42.0
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.2e-187 659.8 1044 44.3
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.1e-185 652.5 1096 41.4
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-183 647.9 838 47.7
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.3e-183 647.9 1077 41.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-182 644.4 1094 43.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.5e-181 641.0 1045 43.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.7e-178 630.2 1088 43.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-173 614.8 1090 41.9
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.0e-173 614.0 1151 44.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.9e-172 610.1 1078 42.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.5e-171 607.1 1004 45.5
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.5e-171 605.9 1076 42.3
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.7e-170 603.6 1055 41.5
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 8.0e-170 602.1 982 44.1
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.8e-169 600.9 1065 41.1
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-168 598.2 1090 41.3
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.4e-168 596.3 1072 42.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.3e-166 589.3 962 41.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.3e-164 584.7 1075 38.6
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 3.8e-164 583.2 1045 41.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.7e-160 568.5 1013 41.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 9.8e-152 542.0 1056 40.2
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.3e-151 541.6 956 41.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.1e-150 538.5 1046 39.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.1e-147 528.5 1049 38.3
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.8e-146 523.9 1036 40.3
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.4e-145 521.5 1056 39.5
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 6.6e-140 502.7 1070 36.0
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.5e-139 500.7 1070 36.0
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.3e-139 500.0 845 42.4
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 3.6e-138 496.9 1095 36.7
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.0e-138 495.7 1032 40.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 6.6e-132 476.1 1077 34.7
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 4.3e-131 473.4 1009 41.5
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 6.8e-129 466.1 1073 34.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 5.8e-128 463.0 917 36.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 9.2e-126 455.7 490 52.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.2e-126 455.7 989 38.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.6e-125 453.4 853 41.3
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 8.9e-121 439.1 731 40.8
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-120 438.7 908 35.5
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.9e-120 435.6 835 38.7
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.2e-119 434.5 719 41.6
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.7e-117 427.6 717 43.2
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.3e-115 420.6 1035 37.5
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.3e-115 420.6 731 42.0
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 7.3e-115 419.5 1049 35.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.1e-114 416.0 974 35.1
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 4.0e-113 413.7 836 36.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 3.4e-112 410.6 502 50.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.3e-111 408.7 983 36.6
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.4e-110 405.2 537 47.5
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.1e-110 402.9 757 37.5
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 7.8e-109 399.4 1076 33.6
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.6e-106 390.6 494 47.6
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 6.2e-106 389.8 897 33.3
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.1e-105 389.0 842 39.1
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 4.2e-102 377.1 522 47.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 5.4e-102 376.7 522 47.1
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.4e-102 376.7 522 47.1
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.3e-102 375.9 986 36.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.7e-100 371.7 505 46.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.7e-100 371.7 504 47.2
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.9e-99 368.2 788 39.6
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-98 365.5 795 37.2
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.1e-97 362.5 918 33.9
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 5.3e-97 360.1 727 38.1
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.9e-95 354.4 899 33.3
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.1e-94 352.4 795 36.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 3.0e-92 344.4 962 33.5
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 7.4e-91 339.7 675 36.1
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.7e-90 337.4 1068 33.0
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.4e-89 334.7 679 35.3
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.4e-88 330.9 823 32.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.3e-87 328.9 668 35.8
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.7e-87 328.6 893 31.7
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.9e-87 327.0 909 31.0
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.9e-86 325.1 893 32.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 7.1e-86 323.2 723 34.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-85 322.4 711 33.3
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.0e-84 319.3 898 31.3
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.8e-84 318.5 835 34.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.0e-84 317.8 1070 31.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 5.7e-83 313.5 764 34.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.1e-82 311.6 1070 30.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.2e-82 309.7 583 36.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 2.4e-81 308.1 725 34.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.1e-81 307.8 676 33.6
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 6.9e-81 306.6 900 31.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.3e-79 302.4 903 30.7
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.5e-77 294.3 455 41.5
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.0e-76 292.7 501 42.3
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.5e-75 288.9 670 33.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 4.3e-75 287.3 683 34.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 4.3e-75 287.3 683 34.4
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.6e-74 285.4 904 31.3
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 2.4e-73 281.6 1021 29.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.4e-72 277.7 785 36.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.4e-68 265.8 978 28.3
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.4e-68 265.8 1015 29.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.2e-63 248.4 750 30.0
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.1e-57 227.6 899 27.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.1e-57 226.5 521 32.6
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 9.1e-57 226.5 688 30.7
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.2e-56 226.1 676 30.8
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.0e-56 225.3 804 33.5
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.1e-53 215.3 675 29.3
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-51 209.5 443 35.2
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.0e-48 198.7 723 28.1
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.5e-46 192.6 685 27.9
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 4.7e-45 187.6 600 30.2
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.8e-41 175.6 518 28.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.0e-40 172.2 771 26.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 4.5e-40 171.0 537 30.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.7e-40 170.2 530 29.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 5.0e-39 167.5 780 26.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 4.0e-36 157.9 517 30.6
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 4.9e-34 151.0 859 27.0
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.1e-29 135.6 488 30.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.9e-26 124.4 514 27.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.8e-24 117.1 495 26.9
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.0e-23 116.7 332 30.1
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.6e-21 108.2 370 30.8
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.1e-20 105.1 536 27.1
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.7e-18 99.4 632 25.2
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.9e-17 95.9 208 48.1
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.8e-16 90.5 810 26.8
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 7.8e-16 90.5 486 25.3
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 2.1e-13 82.4 133 42.1
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 2.1e-13 82.4 133 42.1
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 2.3e-12 79.0 108 47.2
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.1e-12 78.6 186 28.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.1e-12 78.6 186 28.5
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 5.4e-09 67.8 236 27.1
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.0e-07 62.0 74 56.8
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.1e-06 60.1 71 52.1
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 5.6e-06 57.8 86 38.4


User provided reference genes

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