Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 0.0e+00 2993.4 1678 100.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1947.2 1708 69.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1412.5 1761 51.8
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1265.0 1148 61.7
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1141.3 1651 45.5
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1116.7 1429 48.6
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.7e-310 1070.1 1489 47.7
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 2.5e-309 1066.2 1415 46.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.0e-307 1058.9 1425 48.5
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.0e-307 1057.7 1425 48.5
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.6e-303 1047.0 1420 46.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 6.0e-303 1045.0 1406 48.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.0e-302 1044.3 1424 48.3
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 1.5e-301 1040.4 1443 45.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.5e-298 1030.4 1439 46.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 2.7e-295 1019.6 1491 44.4
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 6.7e-294 1015.0 1578 43.7
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.7e-294 1014.6 1666 43.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.1e-291 1007.7 1375 46.3
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.4e-291 1007.3 1417 44.5
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.4e-291 1006.5 1378 45.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 6.9e-291 1005.0 1463 44.6
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 9.0e-291 1004.6 1651 41.0
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.5e-290 1003.8 1675 43.6
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.0e-289 1001.1 1414 44.8
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.9e-288 996.9 1460 43.9
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 5.5e-288 995.3 1659 41.4
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 3.5e-287 992.6 1427 47.2
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 2.3e-286 989.9 1470 43.5
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 3.9e-286 989.2 1671 41.1
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 4.8e-284 982.2 1291 47.6
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 4.8e-284 982.2 1420 47.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 9.0e-283 978.0 1468 43.7
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 7.7e-282 974.9 1424 44.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 1.0e-281 974.5 1450 44.3
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 1.4e-280 970.7 1415 46.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 6.1e-279 965.3 1307 45.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 5.7e-277 958.7 1417 46.2
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 5.3e-275 952.2 1396 43.9
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 6.9e-275 951.8 1379 43.9
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.1e-275 951.4 1655 41.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 4.2e-272 942.6 1472 42.3
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 5.5e-272 942.2 1659 40.9
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 3.6e-271 939.5 1466 42.2
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 8.8e-270 934.9 1377 44.5
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 2.2e-268 930.2 1409 45.5
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 6.3e-268 928.7 1538 41.8
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 3.2e-264 916.4 1454 46.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.5e-261 907.5 1364 44.4
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 5.7e-261 905.6 1286 44.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.0e-257 894.8 1135 47.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 8.0e-255 885.2 1559 39.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.0e-254 884.8 1560 41.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 7.5e-253 878.6 1307 43.4
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.5e-250 869.4 1175 46.6
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 7.7e-250 868.6 1280 43.6
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 9.4e-248 861.7 1463 40.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.6e-247 860.9 1434 40.8
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.4e-246 857.8 1195 45.9
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.2e-245 854.7 1293 42.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.5e-245 854.4 1331 43.4
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.7e-244 850.9 1320 43.5
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 2.2e-244 850.5 1460 41.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.7e-244 849.7 1293 42.6
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 4.1e-243 846.3 1648 37.3
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.6e-242 844.3 1299 42.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.0e-241 841.6 1351 41.1
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.1e-240 838.2 1439 40.2
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.9e-240 837.4 1327 40.8
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 4.3e-240 836.3 1433 40.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.2e-239 834.7 1367 40.5
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.8e-238 830.9 1492 38.3
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 5.2e-238 829.3 1225 43.4
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 5.2e-238 829.3 1436 40.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.6e-234 816.2 1135 44.9
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 5.9e-234 815.8 1279 42.1
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.0e-233 813.5 1440 39.7
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 6.6e-233 812.4 1332 40.2
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 8.6e-233 812.0 1429 39.7
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 9.5e-232 808.5 1430 39.7
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 9.5e-232 808.5 1430 39.7
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.1e-231 807.4 1430 39.9
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.4e-230 804.7 1429 39.4
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 6.8e-230 802.4 1304 40.1
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 4.4e-229 799.7 1402 39.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 7.5e-229 798.9 1312 41.6
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.7e-228 796.6 1367 40.2
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.1e-227 795.0 1298 41.8
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.5e-224 784.6 1323 42.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.1e-219 766.5 1355 39.4
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 5.1e-217 759.6 1297 39.5
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 7.8e-202 709.1 1165 40.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.4e-197 693.7 1161 39.0
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.8e-196 690.3 1431 36.1
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 4.9e-196 689.9 1165 39.5
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.9e-185 653.7 1472 33.8
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 6.7e-185 652.9 1385 35.8
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.7e-183 647.1 1326 35.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.4e-182 644.4 1101 39.8
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 4.2e-179 633.6 491 68.0
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 6.7e-177 626.3 675 52.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.5e-173 613.6 1140 37.5
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.7e-162 577.8 488 62.7
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 5.5e-155 553.5 1177 36.5
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.2e-146 525.8 846 42.2
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.6e-130 471.1 1152 30.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.5e-115 421.8 1358 28.9
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 7.3e-115 420.2 290 73.8
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.6e-114 419.1 1510 26.9
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 4.9e-103 380.9 679 36.4
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.1e-82 312.4 574 36.8
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.0e-80 305.8 246 65.9
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.4e-65 256.5 1216 24.2
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.2e-54 218.8 174 62.6
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.8e-52 213.0 188 61.7
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.2e-46 192.2 129 78.3
Cfa000852 Carpinus fangiana HOM05D005400 ORTHO05D043781 6.5e-39 167.9 121 72.7
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.5e-38 164.9 236 41.1
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.6e-37 163.3 130 66.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-27 130.2 124 53.2
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.1e-25 124.0 533 25.1
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-22 114.0 123 54.5
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.9e-22 113.2 88 63.6
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.7e-18 100.1 106 50.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.7e-18 99.0 240 32.5
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 3.7e-18 99.0 60 75.0
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 7.0e-17 94.7 181 38.1
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 9.1e-17 94.4 71 60.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.2e-14 85.5 97 50.5
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 2.1e-13 83.2 60 66.7
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.2e-11 77.4 95 44.2
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.6e-11 76.3 420 25.5
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.4e-11 75.9 106 45.3
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.4e-09 69.7 120 38.3
QL09p011945 Quercus lobata HOM05D005400 ORTHO05D043781 2.4e-09 69.7 164 32.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.4e-09 68.6 62 56.5
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 2.7e-08 66.2 68 55.9
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 5.6e-06 58.5 40 65.0


User provided reference genes

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