Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.2e-126 456.4 222 100.0
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 8.8e-61 237.7 127 89.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.8e-60 234.2 127 85.8
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 9.8e-60 234.2 166 72.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.8e-59 232.6 127 85.0
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.7e-59 232.3 118 90.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 4.9e-59 231.9 127 84.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-58 230.7 127 83.5
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.8e-58 229.9 124 86.3
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.4e-58 229.6 127 85.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.1e-58 229.2 127 85.8
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 5.4e-58 228.4 124 84.7
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 5.4e-58 228.4 127 83.5
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.0e-58 228.0 127 83.5
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 7.0e-58 228.0 125 83.2
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-58 228.0 125 83.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 7.0e-58 228.0 125 83.2
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 9.2e-58 227.6 126 89.7
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 9.2e-58 227.6 127 87.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-57 226.9 127 81.9
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-57 226.9 127 81.9
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.6e-57 226.9 127 82.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.6e-57 226.9 127 86.6
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.0e-57 226.5 127 86.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.7e-57 226.1 124 83.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 3.5e-57 225.7 127 84.3
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.5e-57 225.7 126 81.7
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.5e-57 225.7 133 84.2
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.5e-57 225.3 127 83.5
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 7.7e-57 224.6 127 81.9
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 7.7e-57 224.6 125 82.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 7.7e-57 224.6 124 83.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 7.7e-57 224.6 118 88.1
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.7e-57 224.6 127 82.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-56 224.2 127 85.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-56 224.2 116 89.7
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.3e-56 223.8 127 86.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.3e-56 223.8 135 80.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-56 223.4 124 82.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-56 223.4 124 82.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.7e-56 223.4 125 85.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.9e-56 222.6 127 81.9
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.8e-56 222.2 120 84.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.8e-56 222.2 128 85.2
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 5.0e-56 221.9 116 87.1
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 6.6e-56 221.5 118 87.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.6e-56 221.5 136 80.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 8.6e-56 221.1 135 80.7
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 8.6e-56 221.1 118 86.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 8.6e-56 221.1 127 82.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.1e-55 220.7 121 84.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-55 220.7 118 87.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.5e-55 220.3 125 84.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.5e-55 220.3 133 79.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.9e-55 219.9 128 83.6
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.5e-55 219.5 112 91.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.5e-55 219.5 126 81.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.3e-55 219.2 134 79.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.3e-55 219.2 130 81.5
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.3e-55 219.2 130 81.5
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.3e-55 219.2 131 80.9
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.6e-55 218.4 128 81.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 5.6e-55 218.4 135 78.5
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 5.6e-55 218.4 130 81.5
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.6e-55 218.4 130 81.5
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.6e-55 218.4 130 81.5
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.6e-55 218.4 130 81.5
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.6e-55 218.4 127 82.7
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.6e-55 218.4 128 81.2
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.3e-55 218.0 130 80.8
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.3e-55 218.0 130 80.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 7.3e-55 218.0 128 82.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 9.5e-55 217.6 127 82.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 9.5e-55 217.6 129 83.7
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 9.5e-55 217.6 127 83.5
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.5e-55 217.6 134 78.4
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.2e-54 217.2 135 77.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-54 217.2 127 82.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.6e-54 216.9 118 84.7
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.6e-54 216.9 107 93.5
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.1e-54 216.5 127 81.9
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.1e-54 216.5 127 81.9
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.1e-54 216.5 134 79.1
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.1e-54 216.5 120 84.2
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.1e-54 216.5 120 84.2
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.6e-54 215.7 131 80.9
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 3.6e-54 215.7 126 81.7
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.7e-54 215.3 126 83.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 6.1e-54 214.9 120 85.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 8.0e-54 214.5 123 85.4
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-53 213.8 117 84.6
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.4e-53 213.8 109 89.0
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-53 213.4 127 81.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.3e-53 213.0 111 89.2
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.0e-53 212.6 126 80.2
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 3.0e-53 212.6 125 79.2
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.0e-53 212.6 127 79.5
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 4.0e-53 212.2 122 78.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 4.0e-53 212.2 122 78.7
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.2e-53 211.8 117 84.6
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 5.2e-53 211.8 135 76.3
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.2e-53 211.8 131 79.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 6.8e-53 211.5 131 79.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 6.8e-53 211.5 131 79.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 6.8e-53 211.5 127 80.3
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.9e-53 211.1 132 78.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 8.9e-53 211.1 132 77.3
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.5e-52 210.3 126 80.2
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.5e-52 210.3 134 74.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.5e-52 210.3 126 83.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.6e-52 209.5 126 80.2
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 3.4e-52 209.1 120 81.7
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.4e-52 209.1 132 76.5
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 4.4e-52 208.8 127 79.5
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 4.4e-52 208.8 132 75.8
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 4.4e-52 208.8 132 75.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.7e-52 208.4 112 87.5
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 5.7e-52 208.4 132 76.5
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.7e-51 206.8 121 81.0
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.2e-51 206.5 117 81.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-51 206.5 134 77.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.2e-51 206.5 134 77.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.4e-50 203.0 127 76.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.2e-50 202.6 118 78.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 5.4e-50 201.8 127 78.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.6e-49 200.3 129 74.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.0e-49 199.9 129 75.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-48 197.6 114 80.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.3e-48 196.4 127 73.2
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 6.6e-48 194.9 114 78.1
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.5e-47 193.7 122 72.1
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.9e-47 193.4 112 78.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.5e-47 193.0 128 74.2
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.3e-47 192.6 116 77.6
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.3e-47 192.2 103 84.5
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.6e-47 191.8 122 70.5
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 7.3e-47 191.4 116 76.7
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 7.3e-47 191.4 112 78.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.6e-46 190.3 189 55.6
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.0e-46 188.0 112 76.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.8e-45 186.8 116 74.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 5.2e-45 185.3 116 74.1
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-41 174.1 158 57.6
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 6.6e-40 168.3 125 64.0
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.5e-39 166.4 117 68.4
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.4e-36 156.0 118 59.3
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.2e-29 132.1 124 58.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.5e-28 130.6 97 61.9
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 6.4e-27 125.2 93 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 8.4e-27 124.8 95 58.9
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.1e-25 120.2 115 56.5
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.5e-25 119.4 95 54.7
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 8.6e-24 114.8 65 84.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 7.3e-23 111.7 84 66.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.3e-23 111.7 97 52.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.2e-22 110.9 65 80.0
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.7e-22 109.0 102 56.9
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 8.1e-22 108.2 56 83.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.1e-22 108.2 119 43.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-21 107.8 64 71.9
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-21 107.1 121 42.1
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-21 106.3 117 44.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-21 106.3 117 44.4
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.2e-19 100.1 61 75.4
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 8.4e-19 98.2 49 91.8
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 5.1e-16 89.0 61 68.9
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.1e-15 87.8 69 60.9
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.5e-15 86.7 65 66.2
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 9.6e-15 84.7 47 87.2
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.6e-14 82.8 55 70.9
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.0e-12 77.0 47 68.1
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 9.9e-12 74.7 64 60.9
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.2e-10 69.3 68 42.6
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-08 64.3 63 44.4
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-08 64.3 63 44.4
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 6.7e-08 62.0 81 43.2


User provided reference genes

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