Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 0.0e+00 1255.7 629 100.0
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.7e-311 1072.0 606 90.4
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 6.2e-285 983.8 624 80.4
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 3.8e-242 841.6 628 68.2
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.6e-240 836.3 624 68.4
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 3.3e-238 828.6 624 68.9
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 3.3e-238 828.6 623 68.4
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 9.7e-238 827.0 630 68.7
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.4e-231 806.6 625 66.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.3e-229 800.0 624 66.7
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 3.7e-229 798.5 628 66.9
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 1.8e-228 796.2 635 66.6
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 3.1e-228 795.4 508 81.3
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 3.1e-228 795.4 545 74.1
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 6.9e-228 794.3 625 66.9
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 4.5e-227 791.6 627 65.1
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.9e-226 788.9 636 65.9
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 4.7e-224 781.6 633 63.5
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.5e-222 776.5 634 65.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.8e-220 769.6 620 66.1
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.2e-219 766.9 625 65.0
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 1.7e-218 763.1 626 62.0
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 6.5e-218 761.1 634 63.2
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 8.5e-218 760.8 633 63.2
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 4.2e-217 758.4 626 63.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 7.2e-217 757.7 608 65.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.8e-215 753.1 624 62.8
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.2e-215 751.5 607 64.6
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 8.8e-215 750.7 624 62.8
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.2e-214 750.4 623 63.1
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.5e-214 750.0 619 64.1
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.2e-213 746.1 622 63.2
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.2e-213 744.2 607 64.1
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-212 743.4 607 63.9
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.8e-212 743.0 620 64.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 4.1e-212 741.9 637 61.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 4.1e-212 741.9 603 64.0
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.2e-211 740.3 615 63.4
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.2e-211 740.3 622 62.5
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 2.7e-211 739.2 634 59.9
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 5.9e-211 738.0 620 62.9
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.9e-209 733.0 622 59.5
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 9.4e-209 730.7 627 60.4
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.7e-208 729.2 621 59.6
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.0e-207 725.7 621 59.6
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.0e-207 725.3 596 63.9
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.0e-206 723.0 630 61.3
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 9.8e-206 720.7 625 60.6
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.4e-204 716.8 623 60.5
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 5.4e-204 714.9 516 70.9
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 9.1e-204 714.1 652 57.8
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 4.5e-203 711.8 627 60.9
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 7.7e-203 711.1 623 60.7
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.2e-202 709.5 565 65.3
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 2.5e-201 706.1 622 59.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 3.2e-201 705.7 624 59.3
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.6e-200 703.4 626 59.1
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 2.1e-200 703.0 610 61.0
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.8e-199 699.9 613 60.0
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 5.2e-199 698.4 613 60.0
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 5.2e-199 698.4 621 60.5
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.5e-198 694.5 613 59.7
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 2.2e-197 693.0 626 57.3
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 3.7e-197 692.2 613 59.4
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 3.7e-197 692.2 622 56.8
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.4e-196 690.3 618 58.6
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.7e-195 686.0 533 64.7
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.5e-195 685.3 619 58.3
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.1e-192 676.4 604 58.4
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.6e-192 675.6 672 53.7
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 4.7e-192 675.2 599 59.4
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.8e-191 673.3 603 56.2
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 6.8e-191 671.4 628 57.5
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.5e-190 670.2 620 58.1
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 2.9e-189 666.0 625 57.1
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 3.7e-189 665.6 609 57.8
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 5.6e-185 651.7 618 58.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.2e-184 650.6 487 70.6
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.1e-184 649.8 623 55.1
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 4.0e-183 645.6 568 60.0
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-182 643.7 621 57.2
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 3.4e-182 642.5 677 51.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 7.5e-182 641.3 524 64.3
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 6.0e-179 631.7 630 55.2
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 7.8e-179 631.3 621 54.4
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 4.7e-176 622.1 507 65.5
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 2.4e-172 609.8 519 60.5
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 5.4e-164 582.0 582 53.1
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 2.3e-162 576.6 599 52.9
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 3.9e-162 575.9 462 63.4
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.4e-156 557.4 474 61.4
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.6e-155 553.9 517 56.9
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.1e-155 553.5 482 56.2
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 5.1e-154 548.9 497 54.9
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 3.3e-153 546.2 455 61.8
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 5.3e-151 538.9 423 63.6
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.5e-142 509.2 350 72.6
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 8.7e-138 495.0 608 48.8
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 4.3e-129 466.1 650 41.8
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.1e-127 461.5 380 63.2
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.9e-125 453.4 656 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 5.5e-124 449.1 657 41.6
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 4.8e-120 436.0 341 65.4
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.2e-112 410.6 499 51.5
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.6e-99 367.9 476 42.6
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 6.1e-99 365.9 408 48.0
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 4.1e-95 353.2 349 55.3
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.6e-94 351.3 291 60.5
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.0e-73 281.2 215 61.9
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.3e-69 268.5 265 53.2
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 3.3e-68 263.8 343 42.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-64 251.1 161 73.9
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-64 251.1 161 73.9
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-64 251.1 161 73.9
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.2e-64 251.1 161 73.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.9e-64 250.8 183 62.8
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 2.7e-62 244.2 389 37.3
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.1e-60 238.8 226 53.5
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 9.5e-60 235.7 155 67.1
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.4e-55 221.9 204 58.3
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 2.5e-52 211.1 233 56.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 2.8e-51 207.6 250 47.2
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 5.1e-45 186.8 178 51.1
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 4.0e-42 177.2 251 44.6
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 3.0e-37 161.0 98 75.5
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.2e-33 149.1 458 27.9
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.3e-32 145.6 143 47.6
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-32 143.7 161 49.7
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 7.1e-31 139.8 148 45.9
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.2e-30 139.0 160 56.2
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-30 138.7 238 34.5
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.7e-30 137.9 76 78.9
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 3.3e-28 131.0 363 27.5
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 9.0e-26 122.9 140 52.9
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 1.3e-21 109.0 171 36.3
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-20 105.9 118 49.2
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.1e-18 99.4 156 49.4
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 1.8e-18 98.6 72 81.9
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-16 92.8 162 35.2
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.3e-16 92.4 45 88.9
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 8.4e-16 89.7 160 36.2
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 9.7e-12 76.3 70 58.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 5.3e-10 70.5 86 38.4
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 5.3e-10 70.5 69 46.4
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 1.0e-08 66.2 77 40.3
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 1.2e-06 59.3 74 43.2
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-06 58.2 53 52.8
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 7.9e-06 56.6 102 31.4


User provided reference genes

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