Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 5.2e-226 787.3 383 100.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.2e-175 618.2 360 86.4
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.8e-123 446.0 361 64.5
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 6.3e-123 444.9 388 60.8
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.6e-121 439.5 359 60.7
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 5.9e-121 438.3 356 62.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.1e-118 429.9 360 60.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 5.7e-116 421.8 353 61.2
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.4e-114 417.2 271 74.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.0e-113 413.3 347 60.8
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.5e-113 412.5 350 58.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 4.5e-113 412.1 350 58.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 5.9e-113 411.8 358 58.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 7.7e-113 411.4 353 60.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.0e-112 411.0 353 58.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.7e-112 410.2 351 60.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.9e-112 409.5 339 60.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.1e-111 407.5 358 58.9
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.4e-111 404.4 349 59.3
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-110 403.7 345 59.7
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.6e-110 403.7 352 57.7
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.7e-110 402.1 378 55.0
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-110 401.7 367 56.7
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.0e-110 401.4 332 64.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.0e-110 401.4 367 56.4
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.8e-109 400.2 365 57.5
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.0e-109 399.4 361 57.1
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.2e-109 398.7 342 57.9
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.2e-108 397.5 353 57.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.0e-108 396.7 318 62.9
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.0e-108 396.7 323 62.8
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.0e-108 396.7 356 59.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.7e-108 395.2 317 60.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.2e-107 393.3 362 55.8
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.2e-107 393.3 354 57.1
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.8e-107 392.9 317 60.6
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 4.1e-106 389.0 354 56.8
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.6e-105 387.1 357 55.2
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.5e-105 385.6 353 55.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 4.5e-105 385.6 354 55.4
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.5e-105 385.6 317 59.3
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.5e-105 385.6 317 58.4
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.7e-105 384.8 317 58.0
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.0e-104 384.4 391 52.9
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.7e-104 383.6 354 54.8
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.7e-104 383.6 354 54.2
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.0e-104 382.1 355 54.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.5e-104 381.7 360 56.1
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.5e-104 381.7 360 56.1
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-103 380.9 379 53.0
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 3.2e-103 379.4 318 60.1
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 9.4e-103 377.9 354 54.8
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.6e-102 377.1 350 54.9
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.1e-102 376.7 365 52.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 3.6e-102 375.9 358 54.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-101 374.0 386 51.6
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 4.0e-101 372.5 358 55.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.0e-100 370.2 349 54.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.3e-99 367.5 306 59.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.7e-99 367.1 362 52.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 4.9e-99 365.5 347 54.8
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.4e-98 364.0 311 57.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.1e-98 362.5 368 53.3
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 7.0e-98 361.7 323 56.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.2e-98 361.3 361 54.0
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.2e-97 360.9 319 57.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.7e-97 359.8 337 58.5
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.9e-97 358.6 323 57.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.0e-96 357.8 340 54.7
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-96 357.8 319 56.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.7e-96 357.1 317 58.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.7e-96 357.1 348 52.3
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.6e-96 355.1 310 59.0
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 8.6e-96 354.8 322 55.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.5e-95 353.2 320 55.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.3e-95 352.8 343 53.6
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.3e-95 352.4 313 57.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.3e-95 351.7 292 60.3
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.1e-94 350.1 339 54.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.1e-94 350.1 336 54.8
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.8e-94 349.7 319 56.1
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.7e-94 349.0 317 55.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 6.1e-94 348.6 355 51.8
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 6.1e-94 348.6 343 54.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 6.1e-94 348.6 346 53.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.0e-93 347.8 350 53.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.4e-93 347.4 336 54.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.4e-93 347.4 308 56.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.3e-93 346.7 313 55.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.0e-93 346.3 348 50.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 3.0e-93 346.3 350 53.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 3.0e-93 346.3 334 53.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 5.2e-93 345.5 350 53.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.5e-92 344.0 313 54.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.6e-92 343.2 287 57.1
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.4e-92 342.8 346 53.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.7e-91 340.5 384 49.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.2e-91 340.1 352 51.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.7e-91 339.3 292 58.2
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 6.4e-91 338.6 313 55.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 4.1e-90 335.9 370 48.9
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.0e-90 335.1 351 51.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 5.9e-89 332.0 281 57.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-88 331.3 304 53.6
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.3e-88 330.9 374 47.9
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.0e-88 329.7 246 66.7
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 7.3e-87 325.1 363 46.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 2.8e-86 323.2 315 54.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.3e-85 320.1 351 49.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.5e-84 317.4 364 48.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.5e-84 317.4 277 56.3
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.6e-84 316.6 290 54.1
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-80 303.9 367 45.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.5e-79 300.8 258 58.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.7e-75 286.2 363 45.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 7.1e-74 282.0 303 46.9
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.5e-71 274.2 240 57.9
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.9e-71 273.9 227 61.2
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-70 271.2 270 51.9
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.6e-68 261.9 300 46.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.7e-67 260.8 275 48.4
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.4e-66 255.8 234 55.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 7.1e-66 255.4 163 73.0
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.3e-64 250.4 243 55.1
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 7.3e-63 245.4 229 57.2
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 6.2e-62 242.3 267 46.4
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.2e-59 233.8 281 40.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.2e-59 233.8 281 40.9
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.2e-58 229.9 231 51.1
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.3e-54 218.0 226 51.8
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-52 210.7 146 66.4
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.4e-52 209.9 169 65.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.4e-50 203.8 161 63.4
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.3e-48 197.2 193 52.3
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-47 194.5 246 44.7
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.5e-47 194.5 322 33.5
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.8e-45 187.6 225 44.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 2.2e-43 180.6 116 71.6
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.3e-40 170.6 303 38.0
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 3.0e-40 170.2 270 35.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 7.6e-36 155.6 136 58.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 6.5e-35 152.5 164 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 8.4e-35 152.1 164 48.2
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.4e-35 152.1 223 38.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 3.0e-32 143.7 138 54.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.3e-30 136.0 107 57.0
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.7e-20 102.4 76 64.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.7e-19 101.3 85 54.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.2e-19 100.9 80 62.5
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-17 94.7 287 27.5
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.1e-17 94.4 123 45.5
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.7e-17 94.0 72 59.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.6e-17 93.2 79 54.4
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 6.1e-17 92.8 100 47.0
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 3.2e-10 70.5 49 65.3
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-09 68.6 36 80.6
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.3e-08 64.3 46 56.5


User provided reference genes

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