Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.0e-116 421.8 202 100.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 3.3e-78 295.4 147 98.0
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 4.6e-64 248.4 147 84.4
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.1e-61 239.6 147 82.3
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.4e-60 236.9 148 81.8
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 4.0e-60 235.3 145 82.1
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 4.0e-52 208.8 145 72.4
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-51 206.5 145 69.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.3e-50 203.8 146 71.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.3e-50 203.8 145 67.6
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.9e-50 202.6 145 67.6
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.7e-50 202.2 145 66.9
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.4e-49 199.5 146 67.1
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 5.4e-49 198.4 145 66.9
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.4e-49 198.4 145 66.9
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 7.1e-49 198.0 145 68.3
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 7.1e-49 198.0 146 69.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 2.1e-48 196.4 146 67.1
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.5e-48 195.7 145 66.2
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.8e-44 183.3 147 65.3
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.4e-44 183.0 145 64.1
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.1e-44 182.6 146 65.1
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.1e-44 182.6 147 61.9
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.1e-44 182.6 147 63.3
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 4.0e-44 182.2 147 61.2
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 5.2e-44 181.8 144 63.2
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 5.2e-44 181.8 147 68.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.6e-43 179.5 148 64.2
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 4.4e-43 178.7 147 66.0
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.3e-42 177.2 147 63.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 8.4e-42 174.5 145 61.4
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.4e-41 173.7 147 61.2
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 3.2e-41 172.6 144 60.4
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 7.1e-41 171.4 146 61.6
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 7.1e-41 171.4 146 61.6
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-40 170.6 127 63.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-39 167.2 147 59.2
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.3e-39 167.2 147 59.2
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.3e-39 167.2 148 60.8
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.3e-39 166.4 144 61.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.0e-39 166.0 147 59.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 5.1e-39 165.2 147 59.9
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-38 164.1 144 62.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 9.6e-38 161.0 147 59.9
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 9.6e-38 161.0 147 59.9
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 2.1e-37 159.8 139 58.3
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.1e-37 159.8 139 59.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.6e-37 159.1 139 58.3
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.8e-37 158.7 148 59.5
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.4e-36 157.1 143 53.8
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 5.3e-36 155.2 147 54.4
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.0e-35 153.3 140 59.3
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.4e-35 152.5 147 59.9
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 5.8e-35 151.8 147 53.7
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 7.6e-35 151.4 136 60.3
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.7e-34 150.2 148 55.4
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.8e-34 149.1 133 57.1
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.4e-34 148.3 145 57.2
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-33 147.1 148 54.7
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-33 146.4 139 57.6
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.4e-33 146.4 147 54.4
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 3.2e-33 146.0 145 56.6
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 9.3e-33 144.4 148 52.7
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.6e-32 143.7 149 55.0
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.6e-32 143.7 147 54.4
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.5e-32 142.5 148 56.1
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.5e-32 142.5 148 56.1
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.5e-32 142.5 145 52.4
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.5e-32 142.5 147 54.4
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 6.0e-32 141.7 145 51.7
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 6.0e-32 141.7 136 57.4
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.0e-31 141.0 148 54.1
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.7e-31 140.2 145 51.7
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.3e-31 139.8 147 51.7
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 2.3e-31 139.8 145 51.7
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.0e-31 139.4 145 53.8
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 5.1e-31 138.7 147 53.7
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 6.6e-31 138.3 148 51.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 6.6e-31 138.3 147 55.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.7e-31 137.9 148 54.7
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 8.7e-31 137.9 145 50.3
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.1e-30 137.5 140 55.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.1e-30 137.5 145 54.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.5e-30 137.1 148 50.7
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.9e-30 136.7 145 50.3
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 4.3e-30 135.6 145 53.1
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.1e-29 133.3 145 51.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 2.1e-29 133.3 145 52.4
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 4.8e-29 132.1 146 50.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 8.1e-29 131.3 137 53.3
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.1e-28 131.0 133 50.4
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-28 129.8 140 54.3
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.2e-27 127.5 139 52.5
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.0e-27 126.7 145 52.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.0e-27 126.7 146 50.0
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 6.4e-26 121.7 140 51.4
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 3.2e-25 119.4 147 47.6
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.2e-25 119.0 148 50.0
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.7e-24 116.3 147 48.3
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.0e-24 115.2 133 51.9
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 7.9e-24 114.8 141 46.8
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.0e-23 114.4 139 51.1
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.0e-23 114.4 147 47.6
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.3e-23 113.2 147 48.3
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.3e-23 113.2 147 49.0
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.9e-23 112.5 133 50.4
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 5.1e-23 112.1 139 50.4
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.7e-23 111.7 133 51.1
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 8.7e-23 111.3 152 49.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.1e-22 110.9 141 46.8
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 1.5e-22 110.5 139 48.2
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.9e-22 110.2 140 50.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.5e-22 109.8 148 46.6
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 3.3e-22 109.4 147 46.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 5.6e-22 108.6 141 46.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 9.6e-22 107.8 150 46.7
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.7e-21 105.9 147 46.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 3.7e-21 105.9 145 46.2
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 6.2e-21 105.1 147 47.6
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 3.1e-20 102.8 148 44.6
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 3.1e-20 102.8 140 45.0
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.0e-20 102.4 141 48.2
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 4.0e-20 102.4 148 48.0
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.9e-20 101.7 148 46.6
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 6.9e-20 101.7 145 45.5
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.9e-20 101.7 148 45.3
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 9.0e-20 101.3 149 47.0
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.2e-19 100.9 149 47.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-19 100.9 140 48.6
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.6e-19 99.8 146 46.6
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.5e-19 99.0 148 45.3
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.5e-19 99.0 148 43.9
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 5.8e-19 98.6 148 45.9
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.6e-19 98.2 148 44.6
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.3e-18 97.4 148 45.9
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.3e-18 97.4 148 45.9
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.2e-18 96.7 133 43.6
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.8e-18 95.9 148 42.6
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.9e-17 93.6 148 43.9
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 4.2e-17 92.4 136 45.6
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.1e-17 91.7 145 43.4
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 7.1e-17 91.7 147 42.9
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 9.3e-17 91.3 149 42.3
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 2.1e-16 90.1 157 39.5
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.1e-16 90.1 141 45.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.5e-16 89.4 148 41.2
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 4.6e-16 89.0 150 44.7
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 1.3e-15 87.4 145 46.2
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 3.0e-15 86.3 105 50.5
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.0e-15 86.3 150 44.7
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 8.7e-15 84.7 145 42.8
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 2.5e-14 83.2 96 49.0
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 4.3e-14 82.4 142 39.4
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.1e-13 80.1 144 41.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 3.7e-13 79.3 146 41.1
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 8.2e-13 78.2 133 44.4
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 4.1e-12 75.9 103 41.7
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.1e-12 75.9 147 40.1
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.1e-12 75.9 152 39.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 6.9e-12 75.1 149 40.3
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 9.0e-12 74.7 148 39.2
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 3.4e-11 72.8 151 40.4
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.4e-11 72.8 76 51.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 5.8e-11 72.0 145 37.9
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 5.0e-10 68.9 157 37.6
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.4e-09 67.4 152 39.5
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 4.2e-09 65.9 139 38.1
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.2e-09 65.9 132 37.9
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.1e-08 63.5 150 38.0
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.7e-08 63.2 157 36.9
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.7e-08 63.2 138 43.5
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.5e-08 62.8 132 37.1
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 4.6e-08 62.4 115 37.4
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.8e-07 60.5 151 35.8
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.8e-07 60.5 63 57.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.0e-07 59.7 81 42.0


User provided reference genes

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