Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00003 Corylus avellana HOM05D004444 ORTHO05D005246 1.2e-143 513.1 253 100.0
Haze_17392 Corylus avellana HOM05D004444 ORTHO05D005246 1.2e-106 390.2 327 67.3
Cfa018662 Carpinus fangiana HOM05D004444 ORTHO05D005246 1.0e-97 360.5 289 69.9
CiPaw.16G000300 Carya illinoinensis HOM05D004444 ORTHO05D005246 1.8e-89 333.2 292 63.7
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 8.8e-73 277.7 289 56.1
ClCG11G012850 Citrullus lanatus HOM05D004444 ORTHO05D005246 2.6e-72 276.2 290 55.5
CsaV3_5G029250 Cucumis sativus L. HOM05D004444 ORTHO05D005246 5.7e-72 275.0 289 55.7
Sed0005704 Sechium edule HOM05D004444 ORTHO05D005246 1.3e-71 273.9 290 54.5
MD16G1005700 Malus domestica HOM05D004444 ORTHO05D005246 3.5e-69 265.8 297 54.5
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 5.9e-69 265.0 295 53.9
Glyma.05G000200 Glycine max HOM05D004444 ORTHO05D005246 1.7e-68 263.5 283 55.1
arahy.Tifrunner.gnm1.ann1.U9T50E Arachis hypogaea HOM05D004444 ORTHO05D005246 3.8e-68 262.3 301 53.2
Glyma.19G000300 Glycine max HOM05D004444 ORTHO05D005246 6.5e-68 261.5 286 54.2
arahy.Tifrunner.gnm1.ann1.8PY7V8 Arachis hypogaea HOM05D004444 ORTHO05D005246 2.5e-67 259.6 301 52.5
RcHm_v2.0_Chr4g0447291 Rosa chinensis HOM05D004444 ORTHO05D005246 4.2e-67 258.8 293 53.9
Sed0021880 Sechium edule HOM05D004444 ORTHO05D005246 4.2e-67 258.8 288 52.1
MD13G1000100 Malus domestica HOM05D004444 ORTHO05D005246 5.5e-67 258.5 298 53.0
VMungo0464G0300 Vigna mungo HOM05D004444 ORTHO05D005246 3.6e-66 255.8 289 54.0
QL01p000088 Quercus lobata HOM05D004444 ORTHO05D005246 4.7e-66 255.4 305 53.8
Phvul.004G000500 Phaseolus vulgaris HOM05D004444 ORTHO05D005246 8.0e-66 254.6 288 53.1
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 4.0e-65 252.3 304 50.7
Prupe.1G584800 Prunus persica HOM05D004444 ORTHO05D005246 7.5e-64 248.1 298 51.3
Thecc.02G151100 Theobroma cacao HOM05D004444 ORTHO05D005246 8.2e-63 244.6 292 53.8
Duzib132G0849 Durio zibethinus HOM05D004444 ORTHO05D005246 1.4e-62 243.8 291 53.3
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 1.4e-62 243.8 302 49.3
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 9.1e-62 241.1 303 49.5
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 1.2e-61 240.7 297 50.5
Duzib248G0301 Durio zibethinus HOM05D004444 ORTHO05D005246 1.6e-61 240.4 290 51.7
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 1.6e-61 240.4 299 49.5
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.7e-61 239.6 291 49.5
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.7e-61 239.6 291 49.5
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.5e-61 239.2 291 49.1
Duzib052G0576 Durio zibethinus HOM05D004444 ORTHO05D005246 4.5e-61 238.8 295 52.9
Gohir.D12G011700 Gossypium hirsutum HOM05D004444 ORTHO05D005246 7.7e-61 238.0 294 52.0
FvH4_4g37380 Fragaria vesca HOM05D004444 ORTHO05D005246 1.0e-60 237.7 291 48.8
Gohir.A12G011300 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.0e-60 237.7 294 51.7
Gorai.008G011700 Gossypium raimondii HOM05D004444 ORTHO05D005246 2.2e-60 236.5 294 51.7
Lj2g0009416 Lotus japonicus HOM05D004444 ORTHO05D005246 2.9e-60 236.1 304 48.4
Gorai.013G066500 Gossypium raimondii HOM05D004444 ORTHO05D005246 1.9e-59 233.4 295 50.5
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 7.2e-59 231.5 295 50.2
TWI74G0409 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 1.6e-58 230.3 293 50.5
Gohir.D13G058925 Gossypium hirsutum HOM05D004444 ORTHO05D005246 2.1e-58 229.9 295 49.8
Sabra10G0199000 Salix brachista HOM05D004444 ORTHO05D005246 2.7e-58 229.6 289 49.5
THA.LOC104818390 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 2.7e-58 229.6 296 49.3
Potri.010G255600 Populus trichocarpa HOM05D004444 ORTHO05D005246 4.7e-58 228.8 292 49.3
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 1.0e-57 227.6 294 50.3
Eucgr.J00322 Eucalyptus grandis HOM05D004444 ORTHO05D005246 3.0e-57 226.1 289 47.1
Gohir.D04G150400 Gossypium hirsutum HOM05D004444 ORTHO05D005246 5.2e-57 225.3 299 50.5
PGR044G0398 Punica granatum HOM05D004444 ORTHO05D005246 2.6e-56 223.0 288 50.7
Gorai.012G137000 Gossypium raimondii HOM05D004444 ORTHO05D005246 7.5e-56 221.5 299 49.8
Atru.chr11.7 Acer truncatum HOM05D004444 ORTHO05D005246 2.2e-55 219.9 269 51.3
Dinv12635 Davidia involucrata HOM05D004444 ORTHO05D005246 2.8e-55 219.5 287 51.2
TWI77G0180 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 4.8e-55 218.8 295 49.8
GSVIVG01003920001 Vitis vinifera HOM05D004444 ORTHO05D005246 8.3e-55 218.0 283 49.5
Potri.008G002100 Populus trichocarpa HOM05D004444 ORTHO05D005246 2.4e-54 216.5 296 48.0
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 2.0e-53 213.4 297 48.1
Lju50C3G3 Lonicera japonica HOM05D004444 ORTHO05D005246 3.5e-53 212.6 286 49.3
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 4.5e-53 212.2 297 48.5
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 1.0e-52 211.1 287 47.0
BolC2t12137H Brassica oleracea HOM05D004444 ORTHO05D005246 1.0e-52 211.1 287 47.0
CSS0046171 Camellia sinensis var. sinensis HOM05D004444 ORTHO05D005246 1.3e-52 210.7 290 49.3
Thhalv10003687m.g Eutrema salsugineum HOM05D004444 ORTHO05D005246 1.3e-52 210.7 297 47.5
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 2.3e-52 209.9 297 47.8
TAR375G0344 Trochodendron aralioides HOM05D004444 ORTHO05D005246 2.3e-52 209.9 284 49.6
Sp2g23710 Schrenkiella parvula HOM05D004444 ORTHO05D005246 5.0e-52 208.8 297 47.1
Aqoxy5G04401 Aquilegia oxysepala HOM05D004444 ORTHO05D005246 8.6e-52 208.0 287 48.1
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 1.5e-51 207.2 283 47.7
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 2.5e-51 206.5 295 47.1
TAR374G0400 Trochodendron aralioides HOM05D004444 ORTHO05D005246 5.5e-51 205.3 284 47.9
Hund09760 Selenicereus undatus HOM05D004444 ORTHO05D005246 4.7e-50 202.2 286 46.2
Sc19g0000340 Simmondsia chinensis HOM05D004444 ORTHO05D005246 4.7e-50 202.2 282 48.9
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 1.0e-49 201.1 282 46.5
SHI21195 Sapria himalayana HOM05D004444 ORTHO05D005246 1.4e-49 200.7 319 41.7
BraA02t09044Z Brassica rapa HOM05D004444 ORTHO05D005246 1.8e-49 200.3 282 45.4
Rhsim02G0256600 Rhododendron simsii HOM05D004444 ORTHO05D005246 4.0e-49 199.1 284 48.2
vmacro18720 Vaccinium macrocarpon HOM05D004444 ORTHO05D005246 4.0e-49 199.1 286 48.6
Aa31LG11G2870 Aethionema arabicum HOM05D004444 ORTHO05D005246 5.2e-49 198.7 297 46.5
EL10Ac3g05121 Beta vulgaris HOM05D004444 ORTHO05D005246 1.5e-48 197.2 289 45.7
Nitab4.5_0003481g0120 Nicotiana tabacum HOM05D004444 ORTHO05D005246 2.0e-48 196.8 283 45.9
Nitab4.5_0005808g0020 Nicotiana tabacum HOM05D004444 ORTHO05D005246 3.4e-48 196.1 283 45.9
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 7.5e-48 194.9 283 45.9
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 1.3e-47 194.1 281 44.5
Hund21081 Selenicereus undatus HOM05D004444 ORTHO05D005246 2.8e-47 193.0 278 43.9
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 8.3e-47 191.4 283 46.3
Sopen01g040230 Solanum pennellii HOM05D004444 ORTHO05D005246 1.1e-46 191.0 283 44.5
SGA_v2.0_scaffold232G43497 Striga asiatica HOM05D004444 ORTHO05D005246 1.1e-46 191.0 283 44.9
Actinidia33639 Actinidia chinensis HOM05D004444 ORTHO05D005246 1.4e-46 190.7 283 45.9
Nn3g18734 Nelumbo nucifera HOM05D004444 ORTHO05D005246 9.2e-46 188.0 284 45.1
Solyc01g096500.3 Solanum lycopersicum HOM05D004444 ORTHO05D005246 9.2e-46 188.0 283 44.2
DCAR_009036 Daucus carota HOM05D004444 ORTHO05D005246 1.2e-45 187.6 286 45.8
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 3.5e-45 186.0 282 43.6
CAN.G1045.17 Capsicum annuum HOM05D004444 ORTHO05D005246 5.9e-45 185.3 282 45.0
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 1.3e-44 184.1 292 43.2
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 2.9e-44 183.0 282 43.6
PSO063G7312 Papaver somniferum HOM05D004444 ORTHO05D005246 2.9e-44 183.0 283 44.9
PSO782G3237 Papaver somniferum HOM05D004444 ORTHO05D005246 8.6e-44 181.4 283 44.2
Oeu064128.1 Olea europaea HOM05D004444 ORTHO05D005246 1.5e-43 180.6 282 44.3
Ah.04g157380 Amaranthus hybridus HOM05D004444 ORTHO05D005246 7.3e-43 178.3 289 43.9
ECA248G3474 Erigeron canadensis HOM05D004444 ORTHO05D005246 2.1e-42 176.8 282 43.6
Lsat_1_v5_gn_1_74220 Lactuca sativa HOM05D004444 ORTHO05D005246 2.1e-42 176.8 284 43.3
DCAR_020440 Daucus carota HOM05D004444 ORTHO05D005246 6.1e-42 175.3 286 43.4
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 1.8e-41 173.7 292 41.4
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 6.8e-41 171.8 265 43.0
Oeu006789.1 Olea europaea HOM05D004444 ORTHO05D005246 4.4e-40 169.1 274 40.9
HanXRQChr01g0023401 Helianthus annuus HOM05D004444 ORTHO05D005246 7.5e-40 168.3 282 42.6
HanXRQChr11g0343011 Helianthus annuus HOM05D004444 ORTHO05D005246 2.2e-39 166.8 283 41.7
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 3.7e-39 166.0 290 39.7
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 7.0e-38 161.8 299 39.5
ATR0810G148 Amborella trichopoda HOM05D004444 ORTHO05D005246 9.2e-38 161.4 285 38.9
Gohir.A04G110200 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.5e-35 154.1 299 41.5
BraA06t26373Z Brassica rapa HOM05D004444 ORTHO05D005246 2.8e-34 149.8 126 61.1
BolC7t44936H Brassica oleracea HOM05D004444 ORTHO05D005246 8.0e-34 148.3 126 61.1
BcaNung03734 Brassica carinata HOM05D004444 ORTHO05D005246 1.4e-33 147.5 126 61.1
CDE09G0893 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 1.3e-31 141.0 284 39.1
MBI04_g37105_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 1.7e-31 140.6 272 39.7
Os10g0516800 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 3.2e-30 136.3 210 41.4
unitig_61.g26366 Utricularia gibba HOM05D004444 ORTHO05D005246 1.9e-27 127.1 203 40.9
CDE11G0399 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 2.5e-27 126.7 284 37.3
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 1.2e-26 124.4 250 34.8
Sc13g0010700 Simmondsia chinensis HOM05D004444 ORTHO05D005246 1.1e-22 111.3 232 37.9
HPP92_022710 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.6e-21 107.5 245 32.7
HPP92_022588 Vanilla planifolia HOM05D004444 ORTHO05D005246 5.6e-19 99.0 202 35.1
Os04g0541500 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 2.8e-18 96.7 243 32.1
TPR.G14805 Trifolium pratense HOM05D004444 ORTHO05D005246 1.4e-17 94.4 95 60.0
PGSC0003DMG400005402 Solanum tuberosum HOM05D004444 ORTHO05D005246 5.2e-17 92.4 159 42.8
Zm00001eb427640 Zea mays HOM05D004444 ORTHO05D005246 1.2e-16 91.3 239 32.2
SMO239G0136 Selaginella moellendorffii HOM05D004444 ORTHO05D005246 1.9e-14 84.0 129 40.3
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 7.8e-13 78.6 74 54.1
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 3.3e-11 73.2 77 45.5
HPP92_008907 Vanilla planifolia HOM05D004444 ORTHO05D005246 1.8e-09 67.4 159 35.2
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 4.4e-08 62.8 179 29.1
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 7.6e-08 62.0 238 27.7
Zm00001eb043540 Zea mays HOM05D004444 ORTHO05D005246 6.4e-07 58.9 161 34.8


User provided reference genes

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