Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 3.3e-40 167.9 84 100.0
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 3.3e-40 167.9 84 100.0
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 9.5e-40 166.4 84 98.8
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 9.5e-40 166.4 84 98.8
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 1.3e-36 156.0 84 92.9
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 2.4e-35 151.8 84 89.3
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 8.6e-25 116.7 84 71.4
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 8.6e-25 116.7 84 71.4
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 8.6e-25 116.7 84 71.4
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 8.6e-25 116.7 84 71.4
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 2.5e-24 115.2 84 70.2
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 8.9e-22 106.7 84 64.3
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 4.4e-21 104.4 74 70.3
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 4.4e-21 104.4 74 70.3
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 2.9e-20 101.7 79 65.8
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 8.3e-20 100.1 60 80.0
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 1.7e-17 92.4 73 64.4
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.3e-16 87.8 84 57.1
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 7.3e-16 87.0 66 65.2
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.8e-15 85.1 84 52.4
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.4e-14 82.8 74 58.1
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 1.4e-14 82.8 78 51.3
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 2.4e-14 82.0 80 51.2
BraSC159t45721Z Brassica rapa HOM05D008283 ORTHO05D009928 3.1e-14 81.6 49 79.6
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.2e-14 80.9 71 59.2
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 8.9e-14 80.1 78 47.4
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.2e-13 79.7 78 46.2
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 1.2e-13 79.7 74 52.7
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 5.8e-13 77.4 78 55.1
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.8e-13 77.4 68 58.8
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 7.6e-13 77.0 74 47.3
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 7.6e-13 77.0 74 47.3
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.9e-13 76.6 79 55.7
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 1.3e-12 76.3 77 51.9
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 1.3e-12 76.3 77 51.9
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.9e-12 75.1 84 48.8
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 79 53.2
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 1.9e-11 72.4 79 53.2
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 1.9e-11 72.4 79 53.2
CARHR259830 Cardamine hirsuta HOM05D008283 ORTHO05D009928 5.4e-11 70.9 78 53.8
Potri.007G061701 Populus trichocarpa HOM05D008283 ORTHO05D009928 5.4e-11 70.9 43 72.1
SabraMtG0004000 Salix brachista HOM05D008283 ORTHO05D009928 5.4e-11 70.9 43 72.1
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 1.6e-10 69.3 72 48.6
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 2.7e-10 68.6 84 46.4
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 3.5e-10 68.2 83 41.0
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 6.0e-10 67.4 75 46.7
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 7.8e-10 67.0 68 54.4
DCAR_022727 Daucus carota HOM05D010940 ORTHO05D009928 1.0e-09 66.6 84 44.0
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 1.3e-09 66.2 72 45.8
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 1.3e-09 66.2 72 45.8
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 1.7e-09 65.9 79 50.6
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 5.1e-09 64.3 72 43.1
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 5.1e-09 64.3 72 43.1
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 5.1e-09 64.3 72 43.1
Thhalv10001273m.g Eutrema salsugineum HOM05D008283 ORTHO05D009928 1.1e-08 63.2 75 45.3
FAN09G4124 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.5e-08 62.0 62 43.5
Lsat_1_v5_gn_0_38260 Lactuca sativa HOM05D010940 ORTHO05D009928 3.3e-08 61.6 84 42.9
Lsat_1_v5_gn_6_64680 Lactuca sativa HOM05D010940 ORTHO05D009928 3.3e-08 61.6 84 42.9
Lsat_1_v5_gn_8_11761 Lactuca sativa HOM05D010940 ORTHO05D009928 3.3e-08 61.6 84 42.9
FAN22G2261 Fragaria x ananassa HOM05D008283 ORTHO05D009928 3.6e-07 58.2 75 41.3
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 4.7e-07 57.8 75 40.0
Lsat_1_v5_gn_7_67861 Lactuca sativa HOM05D010940 ORTHO05D009928 6.2e-07 57.4 84 40.5
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 1.4e-06 56.2 60 41.7
Nitab4.5_0010736g0020 Nicotiana tabacum HOM05D017454 ORTHO05D009928 1.4e-06 56.2 81 40.7
Solyc00g210860.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.4e-06 56.2 82 42.7
Solyc08g036550.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.4e-06 56.2 82 42.7
Nitab4.5_0007800g0030 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.4e-06 55.5 49 51.0
Nitab4.5_0012158g0010 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.1e-06 55.1 55 52.7
Nitab4.5_0001985g0050 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.2e-06 54.3 43 58.1


User provided reference genes

Program Settings