Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 2.0e-152 542.3 266 100.0
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 2.1e-149 532.3 266 97.4
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.1e-147 526.6 266 96.6
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.1e-147 526.6 266 96.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 4.3e-147 524.6 266 97.0
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.4e-145 519.6 266 95.9
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.4e-145 519.6 266 96.2
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.1e-145 518.1 263 96.2
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.2e-144 516.5 266 95.5
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-144 516.2 266 95.5
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.5e-144 516.2 266 95.5
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.6e-144 515.4 266 95.5
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 7.7e-144 513.8 264 95.5
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 95.5
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.2e-143 512.3 266 95.1
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-143 511.5 264 95.1
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.1e-142 510.0 266 94.7
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 4.2e-142 508.1 266 94.0
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.0e-140 501.9 266 93.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 5.1e-140 501.1 266 93.2
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.5e-139 499.6 252 97.6
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.0e-139 499.2 266 93.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 9.7e-139 496.9 266 92.9
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 9.7e-139 496.9 266 92.9
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.7e-138 496.1 263 92.8
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-136 489.6 252 95.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.6e-136 488.8 252 96.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.4e-136 488.4 252 95.6
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 7.7e-136 487.3 252 95.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 7.7e-136 487.3 253 94.9
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-135 486.5 264 91.7
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.6e-131 472.2 243 95.5
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.6e-131 472.2 243 95.5
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 7.4e-131 470.7 265 89.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.1e-129 464.9 265 87.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 3.5e-128 461.8 239 95.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-126 456.8 253 90.5
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 4.7e-125 451.4 266 85.7
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 8.0e-125 450.7 240 92.9
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 8.0e-125 450.7 262 84.7
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.3e-124 449.1 240 92.5
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-124 448.4 263 84.0
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.6e-115 419.1 261 81.6
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.1e-110 403.7 209 94.7
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-110 403.3 257 80.9
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.2e-110 401.7 213 94.8
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 4.4e-107 391.7 211 93.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 4.4e-107 391.7 211 93.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-106 389.8 209 91.9
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 4.9e-106 388.3 252 79.8
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.5e-102 376.7 202 93.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.4e-100 370.2 206 90.8
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.9e-100 367.5 209 86.6
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 9.2e-97 357.5 187 95.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-90 336.7 184 91.3
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 3.9e-87 325.5 161 98.8
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 3.3e-78 295.8 156 93.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 5.6e-78 295.0 150 96.7
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.4e-76 289.7 145 97.2
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 6.8e-76 288.1 148 94.6
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.4e-73 278.5 159 88.7
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.8e-72 274.6 145 92.4
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-71 273.5 195 74.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 3.0e-71 272.7 249 63.1
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 5.1e-71 271.9 148 92.6
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 6.9e-68 261.5 209 67.5
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 6.0e-64 248.4 279 47.3
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 6.6e-63 245.0 130 92.3
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 5.3e-60 235.3 119 95.8
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.9e-60 235.0 160 77.5
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.2e-59 234.2 122 94.3
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 5.4e-57 225.3 124 91.9
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 8.7e-55 218.0 108 97.2
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.8e-53 213.0 116 89.7
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.3e-50 204.1 103 97.1
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.7e-48 196.4 113 90.3
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 3.5e-48 196.1 105 92.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.9e-47 192.6 106 92.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 1.4e-44 184.1 101 86.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.4e-44 184.1 165 62.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-41 174.1 210 47.6
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 7.1e-41 171.8 85 94.1
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-39 167.2 184 53.8
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-36 157.5 81 91.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 5.9e-35 152.1 260 34.6
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-34 149.8 108 71.3
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 7.2e-33 145.2 101 74.3
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-32 144.1 149 55.7
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 2.3e-31 140.2 83 84.3
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 3.9e-31 139.4 82 87.8
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-30 136.3 82 80.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-29 133.7 76 84.2
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.8e-26 122.9 81 79.0
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 5.0e-26 122.5 63 88.9
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 4.2e-25 119.4 154 47.4
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 1.2e-24 117.9 58 98.3
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.4e-22 108.6 64 82.8
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 1.3e-21 107.8 68 75.0
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 2.2e-21 107.1 57 89.5
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-20 103.6 67 77.6
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 4.1e-20 102.8 172 42.4
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 3.8e-18 96.3 65 73.8
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.8e-18 96.3 48 91.7
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.7e-16 90.1 56 82.1
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-15 87.8 53 88.7
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 3.9e-15 86.3 40 90.0
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 6.7e-15 85.5 119 44.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-14 83.6 61 62.3
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.3e-14 83.2 65 58.5
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 8.2e-13 78.6 53 83.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-11 73.6 84 48.8
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 5.9e-11 72.4 59 69.5
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.2e-09 65.5 31 90.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.1e-08 63.9 70 45.7
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.7e-08 63.5 29 96.6
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.7e-08 63.5 31 90.3
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 8.0e-08 62.0 30 83.3
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-06 58.2 74 43.2
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 2.0e-06 57.4 32 78.1
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 5.7e-06 55.8 31 77.4


User provided reference genes

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