Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.3e-38 161.4 91 100.0
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.3e-38 161.4 91 100.0
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 3.3e-38 161.4 91 100.0
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 3.3e-38 161.4 91 100.0
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 3.3e-38 161.4 91 100.0
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 1.6e-37 159.1 91 98.9
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.1e-37 158.7 90 98.9
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.1e-37 158.7 90 98.9
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 6.9e-36 153.7 91 96.7
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 6.9e-36 153.7 91 96.7
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 6.9e-36 153.7 91 96.7
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 9.0e-36 153.3 91 95.6
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 1.2e-35 152.9 91 95.6
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 94.5
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 94.5
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 7.6e-35 150.2 84 98.8
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 7.6e-35 150.2 83 100.0
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 1.7e-34 149.1 85 97.6
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 2.2e-34 148.7 87 95.4
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 2.2e-34 148.7 87 95.4
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.2e-34 148.7 88 95.5
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-34 147.1 84 97.6
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-34 147.1 84 97.6
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-34 147.1 84 97.6
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-34 147.1 84 97.6
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.4e-33 146.0 84 97.6
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 3.2e-33 144.8 87 94.3
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.2e-33 144.4 84 96.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.5e-33 144.1 89 91.0
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.6e-32 142.5 84 95.2
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.1e-32 142.1 83 95.2
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 1.3e-31 139.4 81 97.5
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 2.3e-31 138.7 84 94.0
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-31 137.5 91 89.0
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-31 137.5 91 89.0
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 3.3e-30 134.8 78 97.4
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 5.6e-30 134.0 87 88.5
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.8e-29 131.7 79 92.4
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.8e-29 131.7 79 92.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.4e-28 129.4 87 81.6
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.0e-28 127.9 72 98.6
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 9.0e-28 126.7 91 85.7
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 9.0e-28 126.7 91 85.7
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 9.0e-28 126.7 91 85.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.6e-27 125.2 70 98.6
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 4.5e-27 124.4 70 98.6
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.2e-26 122.1 70 97.1
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 3.8e-26 121.3 70 97.1
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 4.2e-25 117.9 90 78.9
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.1e-24 115.5 71 93.0
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 2.7e-24 115.2 69 94.2
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 6.7e-23 110.5 62 98.4
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 1.1e-22 109.8 64 96.9
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.9e-22 109.0 63 92.1
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 7.4e-22 107.1 63 95.2
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.9e-18 95.1 67 82.1
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 6.5e-18 94.0 54 96.3
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.2e-17 91.7 63 87.3
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 8.8e-15 83.6 55 83.6
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 9.7e-14 80.1 45 97.8
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 2.2e-13 79.0 46 95.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 2.8e-13 78.6 45 95.6
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 2.8e-13 78.6 45 95.6
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.8e-13 77.8 54 79.6
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 3.4e-11 71.6 50 80.0
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 2.9e-10 68.6 57 73.7
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 5.0e-10 67.8 43 86.0
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 7.2e-09 63.9 56 69.6
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 1.6e-08 62.8 44 81.8
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 3.0e-07 58.5 71 59.2
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 3.0e-07 58.5 71 59.2
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 5.1e-07 57.8 37 83.8
Nitab4.5_0000172g2070 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.0e-06 55.8 32 90.6
Cre09.g402552 Chlamydomonas reinhardtii HOM05D008204 ORTHO05D010378 5.7e-06 54.3 84 36.9
BraA02t07598Z Brassica rapa HOM05D008204 ORTHO05D010378 7.4e-06 53.9 38 76.3


User provided reference genes

Program Settings