Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 4.0e-231 804.3 377 100.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.0e-178 630.2 363 80.2
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.2e-174 616.7 361 80.1
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 4.3e-148 528.5 377 65.8
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.0e-145 519.6 377 61.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 5.8e-145 518.1 378 64.0
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 8.3e-144 514.2 380 62.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 4.1e-143 511.9 376 62.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 7.8e-142 507.7 378 63.8
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.0e-141 507.3 378 62.2
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 6.6e-141 504.6 377 63.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 5.6e-140 501.5 378 62.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 2.1e-139 499.6 377 61.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.8e-139 499.2 386 62.7
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 3.6e-139 498.8 378 62.2
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 8.1e-139 497.7 377 61.0
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.4e-138 496.9 374 61.8
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 4.0e-138 495.4 377 61.8
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 6.8e-138 494.6 378 61.1
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 8.9e-138 494.2 376 61.7
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.2e-137 493.8 377 61.8
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.6e-137 492.7 382 61.8
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.3e-136 490.3 377 62.1
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 4.9e-136 488.4 376 58.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.1e-135 487.3 377 61.8
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.4e-135 486.9 376 58.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.9e-135 486.5 377 60.2
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.4e-135 486.1 400 59.8
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.2e-134 483.8 376 58.2
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.6e-134 483.4 378 59.8
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 7.8e-134 481.1 381 59.8
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 7.8e-134 481.1 377 61.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.0e-133 480.7 377 61.8
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.3e-132 475.7 378 59.5
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 9.5e-132 474.2 377 60.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.6e-131 473.4 378 57.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 2.1e-131 473.0 377 60.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.1e-131 473.0 379 59.4
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 3.6e-131 472.2 406 55.9
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.1e-130 470.7 399 56.4
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 6.8e-130 468.0 382 58.4
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.8e-130 468.0 379 58.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.2e-129 467.2 379 58.3
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.2e-129 467.2 378 57.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 1.5e-129 466.8 382 57.9
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 4.4e-129 465.3 377 58.4
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 5.8e-129 464.9 385 58.4
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 9.9e-129 464.2 377 57.0
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.3e-128 463.8 364 60.2
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.2e-128 463.0 380 58.4
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.2e-128 463.0 377 57.8
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 4.9e-128 461.8 377 58.6
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.9e-127 459.9 380 57.4
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 7.1e-127 458.0 377 57.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.2e-127 457.6 384 56.2
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 9.2e-127 457.6 420 53.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.6e-126 456.8 380 56.1
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.5e-126 455.7 380 56.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 6.0e-126 454.9 380 57.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 7.8e-126 454.5 381 57.0
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 7.8e-126 454.5 381 57.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 7.8e-126 454.5 405 52.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.7e-125 453.4 394 56.6
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 6.6e-125 451.4 381 56.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.3e-124 449.1 379 56.7
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 7.3e-124 448.0 468 49.1
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-123 446.8 384 55.7
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.1e-122 444.1 380 57.9
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 4.0e-122 442.2 377 55.2
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 5.2e-122 441.8 347 59.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.5e-121 440.3 383 55.9
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.6e-121 439.5 344 59.9
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.3e-120 437.2 378 55.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 3.8e-120 435.6 378 52.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.4e-119 433.7 348 60.1
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.1e-118 429.9 377 55.4
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 5.6e-116 421.8 388 52.8
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 5.3e-114 415.2 329 59.9
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.9e-114 414.8 349 55.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.4e-106 390.6 352 53.7
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.1e-106 389.4 304 60.2
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.2e-104 383.3 321 57.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 5.1e-101 372.1 383 50.4
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.3e-100 369.4 380 48.2
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 4.0e-98 362.5 392 47.2
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.5e-97 360.5 273 62.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 2.9e-96 356.3 308 52.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 3.3e-92 342.8 376 43.9
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.8e-91 339.7 389 46.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 6.9e-90 335.1 397 44.3
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 9.0e-90 334.7 305 54.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.2e-88 330.1 379 43.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 9.3e-87 324.7 284 55.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-83 313.9 249 57.4
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.5e-81 307.4 267 56.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.2e-80 303.5 377 41.9
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.6e-78 296.2 352 44.3
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 3.7e-75 286.2 377 41.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.6e-70 269.6 309 46.0
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.0e-65 253.8 216 53.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 4.7e-46 189.5 289 34.9
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.8e-42 177.6 395 31.6
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 4.1e-42 176.4 82 97.6
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.2e-41 174.9 370 32.4
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.0e-41 174.1 370 32.2
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 2.7e-41 173.7 381 32.0
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.5e-41 173.3 375 32.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 4.5e-41 172.9 370 31.6
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 4.5e-41 172.9 370 31.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.0e-40 171.8 372 31.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.3e-40 171.4 372 31.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.7e-40 171.0 373 31.9
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.7e-40 171.0 379 32.5
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.7e-40 171.0 379 33.2
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.3e-40 170.6 386 31.6
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.9e-40 170.2 379 32.5
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.8e-40 169.9 393 31.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 5.0e-40 169.5 379 32.5
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 6.6e-40 169.1 377 32.6
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 8.6e-40 168.7 371 32.3
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.1e-39 168.3 390 32.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.5e-39 167.9 379 32.2
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.5e-39 167.9 382 30.4
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.9e-39 167.5 371 31.5
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 2.5e-39 167.2 381 31.2
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.3e-39 166.8 382 29.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 4.3e-39 166.4 382 31.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 4.3e-39 166.4 382 31.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.2e-38 164.9 388 32.2
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.2e-38 164.9 382 31.4
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.2e-38 164.9 382 31.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.6e-38 164.5 378 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.1e-38 164.1 377 29.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.1e-38 164.1 386 32.4
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 2.1e-38 164.1 380 31.3
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.1e-38 164.1 382 30.9
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.8e-38 163.7 375 33.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.8e-38 163.7 395 31.6
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.8e-38 163.7 395 31.6
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 3.6e-38 163.3 369 29.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 6.1e-38 162.5 382 30.9
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 6.1e-38 162.5 382 31.4
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 6.1e-38 162.5 382 32.2
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 8.0e-38 162.2 385 31.7
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 8.0e-38 162.2 394 31.7
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.8e-37 161.0 371 30.7
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 2.3e-37 160.6 370 32.7
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.3e-37 160.6 386 30.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.0e-37 160.2 382 30.9
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 4.0e-37 159.8 152 50.0
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 4.0e-37 159.8 383 29.8
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 6.8e-37 159.1 374 31.6
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 8.9e-37 158.7 390 31.5
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.2e-36 158.3 392 31.1
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.0e-36 157.5 391 29.7
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 2.0e-36 157.5 392 31.4
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 2.6e-36 157.1 379 31.4
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.6e-36 157.1 376 29.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 3.4e-36 156.8 392 31.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.9e-35 153.7 363 31.4
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.0e-33 147.5 118 60.2
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 4.6e-33 146.4 371 28.8
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 8.6e-32 142.1 174 47.7
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.3e-29 134.0 377 28.4
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.3e-29 134.0 125 52.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.9e-27 127.1 244 32.4
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.1e-26 125.2 438 25.8
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.4e-26 124.0 91 63.7
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.4e-26 124.0 129 47.3
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 6.6e-24 115.9 77 70.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.1e-22 110.9 242 33.5
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.2e-20 105.1 74 63.5
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 3.4e-20 103.6 73 63.0
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 7.5e-20 102.4 140 44.3
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.7e-19 101.3 202 35.1
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.2e-19 100.9 126 45.2
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 5.4e-18 96.3 55 74.5
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 4.3e-15 86.7 64 60.9
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.4e-10 70.9 89 40.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 3.5e-09 67.0 190 26.8
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 1.5e-07 61.6 51 58.8
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 2.8e-06 57.4 70 41.4


User provided reference genes

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