Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.5e-27 124.8 67 100.0
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-26 121.7 66 97.0
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-26 121.7 66 97.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-26 121.7 66 97.0
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 2.8e-26 121.3 67 97.0
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 8.1e-26 119.8 66 93.9
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-25 119.4 66 95.5
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-25 118.6 67 95.5
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 2.4e-25 118.2 66 90.9
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.4e-25 118.2 66 92.4
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 4.0e-25 117.5 66 90.9
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.0e-25 117.5 66 90.9
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 4.0e-25 117.5 66 90.9
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 4.0e-25 117.5 66 90.9
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 4.0e-25 117.5 66 90.9
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.3e-25 117.1 66 89.4
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.3e-25 117.1 66 89.4
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.3e-25 117.1 66 89.4
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.3e-25 117.1 66 89.4
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.2e-24 115.9 62 98.4
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 1.2e-24 115.9 66 89.4
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.0e-24 115.2 66 87.9
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 2.6e-24 114.8 66 87.9
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 2.6e-24 114.8 66 87.9
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.6e-24 114.8 66 87.9
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 4.5e-24 114.0 66 87.9
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 4.5e-24 114.0 66 87.9
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 4.5e-24 114.0 66 87.9
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 5.8e-24 113.6 66 86.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.8e-24 113.6 66 86.4
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 5.8e-24 113.6 66 90.9
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.6e-24 113.2 66 86.4
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 7.6e-24 113.2 66 89.4
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 2.2e-23 111.7 66 86.4
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.9e-23 111.3 66 87.9
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.9e-23 111.3 66 87.9
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.9e-23 111.3 66 87.9
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 2.9e-23 111.3 66 83.3
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.9e-23 111.3 66 86.4
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.9e-23 111.3 66 86.4
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.4e-23 109.8 66 86.4
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 1.1e-22 109.4 66 84.8
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 1.1e-22 109.4 66 84.8
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-22 109.4 66 83.3
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 1.4e-22 109.0 66 84.8
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.4e-22 107.1 66 81.8
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 7.1e-22 106.7 66 83.3
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 9.3e-22 106.3 64 87.5
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 81.8
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 1.6e-21 105.5 66 77.3
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 2.1e-21 105.1 64 84.4
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 2.1e-21 105.1 66 81.8
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 6.0e-21 103.6 67 80.6
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 7.9e-21 103.2 66 80.3
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 7.9e-21 103.2 64 82.8
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 1.8e-20 102.1 66 81.8
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 3.9e-20 100.9 66 78.8
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 3.9e-20 100.9 59 91.5
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 6.7e-20 100.1 59 84.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.5e-19 99.0 66 77.3
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 2.1e-18 95.1 58 81.0
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.8e-18 94.0 57 78.9
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.3e-17 90.5 64 76.6
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 9.0e-17 89.7 52 88.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 9.0e-17 89.7 52 88.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 3.4e-16 87.8 51 88.2
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 2.2e-15 85.1 53 86.8
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 3.8e-15 84.3 51 86.3
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 7.1e-14 80.1 52 80.8
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 7.1e-14 80.1 52 80.8
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.8e-12 75.5 52 73.1
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 3.0e-12 74.7 52 76.9
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 5.1e-12 73.9 40 92.5
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.3e-10 69.3 40 85.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 1.6e-10 68.9 41 78.0
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 6.2e-10 67.0 71 59.2
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.8e-09 65.5 40 80.0
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 3.1e-09 64.7 62 61.3
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 4.0e-09 64.3 40 77.5
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 6.9e-09 63.5 66 60.6
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-08 60.8 65 60.0
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 5.8e-08 60.5 42 78.6
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.3e-07 59.3 40 75.0
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 1.9e-06 55.5 43 60.5
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 3.2e-06 54.7 32 78.1


User provided reference genes

Program Settings