Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.2e-99 365.2 193 100.0
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 7.4e-88 327.4 184 94.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 4.5e-85 318.2 199 84.9
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.7e-79 298.5 184 84.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 8.2e-79 297.4 180 84.4
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-78 297.0 180 84.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.8e-78 296.2 193 82.4
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.8e-78 296.2 176 85.8
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 179 83.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.4e-78 295.8 183 83.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 183 82.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 6.9e-78 294.3 194 79.4
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.0e-78 293.9 194 81.4
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.2e-77 293.5 196 78.1
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-77 293.5 189 79.9
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.2e-77 293.5 180 83.3
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.5e-77 293.1 191 80.6
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.6e-77 292.4 189 78.8
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 3.4e-77 292.0 189 78.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.5e-77 291.6 183 81.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 4.5e-77 291.6 193 78.8
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 7.7e-77 290.8 193 80.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 7.7e-77 290.8 179 82.7
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 7.7e-77 290.8 179 83.2
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.3e-76 290.0 184 82.6
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.2e-76 289.3 183 80.3
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.9e-76 288.9 180 81.7
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 3.8e-76 288.5 194 78.4
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 5.0e-76 288.1 189 79.4
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 6.5e-76 287.7 187 80.2
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.5e-76 287.7 172 85.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 8.5e-76 287.3 187 80.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 8.5e-76 287.3 184 81.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 8.5e-76 287.3 195 76.9
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 8.5e-76 287.3 184 82.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-75 287.0 193 79.3
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.9e-75 286.2 187 79.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.5e-75 285.8 189 77.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 79.9
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.2e-75 285.4 187 80.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 78.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.2e-75 285.0 193 78.8
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 5.5e-75 284.6 199 77.4
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 9.4e-75 283.9 187 77.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.4e-75 283.9 186 80.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-74 283.5 187 77.5
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 187 77.5
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.2e-74 283.5 195 76.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.2e-74 283.5 195 76.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.2e-74 283.5 189 79.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-74 283.1 186 80.1
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.7e-74 282.3 173 83.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.7e-74 282.3 188 77.1
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.7e-74 282.3 187 78.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.7e-74 282.3 187 78.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.6e-74 282.0 192 77.1
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 3.6e-74 282.0 189 78.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.6e-74 282.0 194 77.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 3.6e-74 282.0 196 77.0
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.6e-74 282.0 185 79.5
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 4.6e-74 281.6 184 79.3
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.6e-74 281.6 191 79.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.6e-74 281.6 194 76.8
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 4.6e-74 281.6 187 78.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.1e-74 281.2 187 77.0
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 6.1e-74 281.2 195 77.9
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.1e-74 281.2 172 83.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.9e-74 280.8 194 78.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.0e-73 280.4 192 75.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.0e-73 280.4 183 79.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.4e-73 280.0 184 79.3
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.4e-73 280.0 206 73.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.8e-73 279.6 189 78.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-73 279.6 178 80.9
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.0e-73 278.9 189 78.3
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.0e-73 278.9 179 78.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 3.0e-73 278.9 189 76.7
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.9e-73 278.5 192 76.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.9e-73 278.5 192 76.6
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 3.9e-73 278.5 171 83.6
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.9e-73 278.5 189 77.8
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.9e-73 278.5 235 66.8
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 8.8e-73 277.3 183 78.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 8.8e-73 277.3 193 77.2
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 8.8e-73 277.3 175 80.6
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 8.8e-73 277.3 167 84.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 8.8e-73 277.3 183 79.2
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.5e-72 276.6 183 78.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 179 81.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-72 275.8 187 77.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-72 275.8 187 77.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.5e-72 275.8 187 77.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.5e-72 275.8 187 77.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.3e-72 275.0 182 79.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.7e-72 274.6 196 76.5
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 5.7e-72 274.6 189 77.2
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 9.7e-72 273.9 189 73.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.7e-72 273.9 196 73.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-71 273.5 176 78.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.7e-71 273.1 189 76.7
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-71 273.1 189 76.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 5.3e-70 268.1 189 74.1
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.2e-69 266.9 179 76.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.5e-69 266.5 168 83.3
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.4e-69 265.4 184 76.1
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 4.5e-69 265.0 222 66.7
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.8e-68 261.9 231 64.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 8.5e-68 260.8 179 76.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-66 256.1 247 58.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.0e-65 253.8 157 84.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.8e-65 253.1 216 64.8
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.6e-64 249.2 185 73.5
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 7.0e-62 241.1 157 79.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.7e-60 236.5 168 70.2
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.2e-60 236.1 189 68.8
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.9e-60 235.7 144 82.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.2e-59 231.1 194 68.0
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.1e-58 229.6 172 68.6
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.8e-57 226.5 169 66.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.3e-57 226.1 135 85.2
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.7e-56 221.5 135 83.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 7.4e-56 221.1 139 82.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.4e-54 216.9 168 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 4.1e-54 215.3 177 61.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.0e-53 213.0 131 84.0
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.4e-51 204.1 123 87.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.3e-49 199.5 131 79.4
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 6.3e-47 191.4 126 77.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.3e-47 191.4 126 77.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.1e-46 190.7 143 70.6
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.4e-46 189.5 218 55.0
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.4e-46 189.5 110 89.1
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 3.2e-43 179.1 124 71.8
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-41 172.6 109 83.5
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-40 170.2 102 84.3
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 7.0e-38 161.4 98 80.6
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.7e-37 159.5 113 74.3
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-36 155.6 93 84.9
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 7.2e-35 151.4 171 46.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.8e-34 149.4 102 76.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.8e-32 141.0 82 87.8
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 8.3e-31 137.9 170 42.9
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 3.2e-30 136.0 93 79.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 7.0e-30 134.8 102 70.6
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.6e-29 132.1 190 38.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.3e-28 129.8 94 73.4
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.6e-28 127.9 96 69.8
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.5e-27 127.1 169 38.5
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.6e-26 123.6 87 69.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.0e-25 119.0 104 64.4
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.2e-24 117.5 101 66.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.2e-23 113.2 75 77.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.0e-21 106.7 66 80.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-15 86.7 52 80.8
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 7.8e-13 78.2 49 81.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-10 70.9 111 45.0
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-10 70.5 111 45.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-10 70.5 111 45.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.6e-10 69.3 111 45.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-10 68.6 111 44.1
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.6e-08 63.2 115 40.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.8e-08 62.0 36 83.3
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 7.6e-08 61.6 68 52.9


User provided reference genes

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