Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.0e-134 481.1 240 100.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 7.6e-66 254.6 124 98.4
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.0e-25 119.0 66 86.4
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.6e-18 96.7 83 61.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 4.5e-18 95.9 84 63.1
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.0e-17 94.7 68 72.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 4.7e-15 85.9 64 62.5
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 6.7e-14 82.0 104 47.1
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 5.7e-13 79.0 64 57.8
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 9.7e-13 78.2 67 53.7
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.3e-12 77.8 73 53.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.2e-12 77.0 54 63.0
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 6.3e-12 75.5 51 64.7
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 6.3e-12 75.5 64 56.2
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.1e-11 74.7 62 54.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.8e-11 73.9 48 68.8
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 4.1e-11 72.8 81 48.1
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 6.9e-11 72.0 72 50.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 9.1e-11 71.6 48 66.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 9.1e-11 71.6 48 66.7
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.2e-10 71.2 57 57.9
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.5e-10 70.9 48 64.6
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.5e-10 70.9 57 57.9
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 3.4e-10 69.7 48 62.5
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 3.4e-10 69.7 64 51.6
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 3.4e-10 69.7 68 50.0
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 4.5e-10 69.3 69 50.7
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.5e-10 69.3 74 50.0
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 7.7e-10 68.6 66 50.0
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 7.7e-10 68.6 57 59.6
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.0e-09 68.2 74 48.6
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 1.0e-09 68.2 72 45.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.7e-09 67.4 80 45.0
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.2e-09 67.0 71 47.9
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.2e-09 67.0 71 47.9
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.2e-09 67.0 82 42.7
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 2.9e-09 66.6 64 51.6
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 3.8e-09 66.2 63 50.8
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.5e-09 65.5 68 45.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 6.5e-09 65.5 81 45.7
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 8.5e-09 65.1 82 41.5
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 8.5e-09 65.1 74 48.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.1e-08 64.7 57 54.4
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.1e-08 64.7 61 50.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.4e-08 64.3 48 60.4
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.4e-08 64.3 63 50.8
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.4e-08 64.3 64 50.0
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-08 63.5 71 43.7
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 2.5e-08 63.5 60 51.7
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 3.2e-08 63.2 76 43.4
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 4.2e-08 62.8 81 43.2
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 4.2e-08 62.8 82 41.5
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.5e-08 62.4 83 41.0
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 5.5e-08 62.4 90 41.1
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 9.4e-08 61.6 79 43.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 9.4e-08 61.6 42 59.5
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 9.4e-08 61.6 65 49.2
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.2e-07 61.2 79 43.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.6e-07 60.8 65 43.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.1e-07 60.5 66 50.0
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 2.1e-07 60.5 65 50.8
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 2.1e-07 60.5 63 46.0
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 2.1e-07 60.5 63 46.0
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 2.7e-07 60.1 86 43.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.7e-07 59.3 41 61.0
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 4.7e-07 59.3 68 45.6
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 4.7e-07 59.3 77 39.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 6.1e-07 58.9 64 43.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 6.1e-07 58.9 69 46.4
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 8.0e-07 58.5 114 36.8
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.0e-06 58.2 80 42.5
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 1.0e-06 58.2 80 41.2
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.0e-06 58.2 90 38.9
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.0e-06 58.2 86 37.2
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.4e-06 57.8 64 46.9
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.4e-06 57.8 86 37.2
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.8e-06 57.4 80 41.2
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 2.3e-06 57.0 90 34.4
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.3e-06 57.0 80 38.8
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 2.3e-06 57.0 91 34.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.0e-06 56.6 63 42.9
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.0e-06 56.6 63 42.9
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.0e-06 56.6 63 42.9
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.0e-06 56.6 63 42.9
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 3.0e-06 56.6 105 35.2
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 3.0e-06 56.6 86 39.5
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 3.9e-06 56.2 110 34.5
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 5.2e-06 55.8 80 38.8
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 5.2e-06 55.8 84 38.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 5.2e-06 55.8 84 38.1
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 6.7e-06 55.5 64 39.1
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 8.8e-06 55.1 86 34.9


User provided reference genes

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