Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 4.7e-191 671.0 330 100.0
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 1.2e-159 566.6 354 81.9
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 5.6e-152 541.2 347 77.8
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 4.0e-150 535.0 343 77.6
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 4.0e-150 535.0 342 78.1
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.2e-149 533.5 342 78.9
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.7e-148 529.6 339 78.2
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 8.6e-145 517.3 342 74.9
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.5e-144 516.5 339 75.5
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.2e-143 513.5 341 76.2
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 8.9e-142 507.3 353 72.0
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 2.6e-141 505.8 350 72.3
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 4.4e-141 505.0 343 72.0
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 4.4e-141 505.0 343 72.0
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 5.8e-141 504.6 347 73.2
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.2e-140 502.7 349 72.8
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 2.2e-140 502.7 343 71.7
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.1e-139 500.4 338 74.3
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.9e-139 499.6 352 70.7
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.4e-139 499.2 347 71.2
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.4e-139 499.2 347 70.9
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 5.4e-139 498.0 348 71.3
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 7.0e-139 497.7 347 71.2
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 9.2e-139 497.3 345 70.7
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 1.2e-138 496.9 347 71.5
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 1.6e-138 496.5 334 74.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.6e-138 496.5 348 70.4
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.1e-138 496.1 351 70.4
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.1e-138 496.1 351 70.4
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.3e-137 493.4 352 70.2
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.7e-137 493.0 344 72.7
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 1.7e-137 493.0 358 69.6
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 3.0e-137 492.3 356 69.9
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 3.0e-137 492.3 350 70.0
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 3.9e-137 491.9 352 70.2
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 8.6e-137 490.7 368 68.5
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 1.1e-136 490.3 340 73.2
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.9e-136 489.6 352 71.0
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 4.3e-136 488.4 357 68.9
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 5.6e-136 488.0 355 70.4
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 3.6e-135 485.3 360 68.3
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 6.2e-135 484.6 350 70.9
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.4e-134 483.4 341 71.3
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.3e-134 482.6 362 67.7
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 3.1e-134 482.3 360 69.2
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 3.1e-134 482.3 360 69.2
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 4.0e-134 481.9 363 68.0
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 4.0e-134 481.9 343 71.1
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 6.8e-134 481.1 360 69.7
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 6.8e-134 481.1 354 69.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.0e-133 479.6 350 69.4
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 3.4e-133 478.8 348 67.2
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 3.4e-133 478.8 365 67.9
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.4e-133 478.4 358 68.4
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 5.8e-133 478.0 346 69.4
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.3e-132 476.9 356 68.5
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.2e-131 472.2 354 69.2
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 5.4e-131 471.5 354 66.7
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 5.4e-131 471.5 357 65.5
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 5.4e-131 471.5 347 68.9
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 9.2e-131 470.7 351 70.4
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.2e-130 470.3 312 74.0
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.6e-130 469.9 356 67.4
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.1e-130 469.5 358 66.8
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 2.7e-130 469.2 353 66.6
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 6.0e-130 468.0 379 64.9
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 6.0e-130 468.0 379 64.9
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 6.0e-130 468.0 354 65.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.3e-129 466.8 358 65.6
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.7e-129 466.5 355 65.6
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 2.3e-129 466.1 359 65.2
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 3.0e-129 465.7 347 65.7
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 3.9e-129 465.3 356 64.6
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 5.1e-129 464.9 348 68.1
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 6.6e-129 464.5 356 64.6
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 8.6e-129 464.2 346 69.4
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 1.1e-128 463.8 356 64.6
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 1.1e-128 463.8 356 64.6
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.5e-128 463.4 348 65.5
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.5e-128 463.4 350 68.6
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 2.5e-128 462.6 355 65.1
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 4.3e-128 461.8 357 65.0
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 5.6e-128 461.5 369 65.9
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 5.6e-128 461.5 364 65.7
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 1.6e-127 459.9 355 64.8
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 2.1e-127 459.5 348 67.2
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.6e-127 458.8 347 66.6
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 8.1e-127 457.6 345 68.1
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 5.2e-126 454.9 354 66.1
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.2e-125 453.8 426 58.0
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 2.9e-124 449.1 356 65.2
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 6.4e-124 448.0 359 64.6
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.2e-122 443.7 318 70.8
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.6e-122 443.4 350 66.0
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 4.6e-122 441.8 354 64.1
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.9e-120 436.4 342 63.7
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 1.6e-119 433.3 327 68.2
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 5.3e-118 428.3 342 62.6
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 1.2e-117 427.2 357 60.5
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 3.4e-117 425.6 324 67.6
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 2.2e-116 422.9 313 69.6
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 2.9e-116 422.5 323 66.3
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 7.8e-114 414.5 352 62.2
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.5e-112 409.5 339 60.5
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 5.6e-112 408.3 357 58.8
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 9.6e-112 407.5 338 60.1
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.4e-108 394.4 346 57.8
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.0e-105 386.0 293 62.5
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.3e-104 382.5 296 63.5
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.1e-102 377.5 313 62.6
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.6e-101 372.9 281 68.3
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.1e-99 367.5 287 67.6
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.3e-97 360.5 337 53.4
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.8e-97 360.1 337 55.8
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 3.9e-97 359.0 194 86.1
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 1.5e-96 357.1 194 86.1
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 3.3e-96 355.9 286 65.7
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.3e-95 354.0 343 55.4
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 3.7e-95 352.4 295 58.6
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.7e-95 352.4 228 75.0
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 6.2e-95 351.7 343 55.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.8e-94 350.1 340 52.4
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 9.0e-94 347.8 194 83.0
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 1.2e-93 347.4 285 61.8
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 7.4e-88 328.2 293 52.9
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.9e-67 260.4 153 77.8
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.8e-60 236.1 126 85.7
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 8.5e-60 235.0 202 59.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.2e-52 210.3 196 56.1
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.1e-46 191.4 172 61.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.7e-45 186.8 325 41.5
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.5e-43 181.0 100 82.0
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.5e-35 154.5 142 57.7
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.6e-35 152.5 144 58.3
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 2.6e-32 143.7 133 58.6
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.1e-30 136.3 101 69.3
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.9e-27 127.5 83 73.5
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 1.2e-26 124.8 223 39.0
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 3.6e-26 123.2 73 75.3
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.8e-25 120.9 73 74.0
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.4e-16 90.1 111 41.4
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 6.2e-10 69.3 43 69.8
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 1.5e-08 64.7 70 54.3


User provided reference genes

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