Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0568881 Helianthus annuus HOM05D003068 ORTHO05D003444 9.5e-41 169.9 93 100.0
HanXRQChr08g0210011 Helianthus annuus HOM05D003068 ORTHO05D003444 8.6e-18 93.6 90 62.2
HanXRQChr12g0362261 Helianthus annuus HOM05D003068 ORTHO05D003444 2.5e-17 92.0 73 71.2
Hund25484 Selenicereus undatus HOM05D003068 ORTHO05D003444 2.5e-17 92.0 96 63.5
ECA233G3893 Erigeron canadensis HOM05D003068 ORTHO05D003444 4.3e-17 91.3 91 61.5
Cc11_g17310 Coffea canephora HOM05D003068 ORTHO05D003444 6.2e-16 87.4 97 58.8
Nitab4.5_0002480g0020 Nicotiana tabacum HOM05D003068 ORTHO05D003444 2.4e-15 85.5 92 60.9
DCAR_024651 Daucus carota HOM05D003068 ORTHO05D003444 3.1e-15 85.1 91 64.8
Nitab4.5_0000039g0080 Nicotiana tabacum HOM05D003068 ORTHO05D003444 3.1e-15 85.1 92 60.9
Lj3C1074T4 Lonicera japonica HOM05D003068 ORTHO05D003444 5.2e-15 84.3 98 54.1
Hund06111 Selenicereus undatus HOM05D003068 ORTHO05D003444 6.8e-15 84.0 82 63.4
AUR62005661 Chenopodium quinoa HOM05D003068 ORTHO05D003444 1.2e-14 83.2 92 60.9
Dinv11705 Davidia involucrata HOM05D003068 ORTHO05D003444 1.2e-14 83.2 96 56.2
Lj6A832T38 Lonicera japonica HOM05D003068 ORTHO05D003444 1.2e-14 83.2 106 51.9
Actinidia30621 Actinidia chinensis HOM05D003068 ORTHO05D003444 1.5e-14 82.8 92 58.7
Ah.02g131010 Amaranthus hybridus HOM05D003068 ORTHO05D003444 1.5e-14 82.8 99 57.6
CiPaw.05G106000 Carya illinoinensis HOM05D003068 ORTHO05D003444 1.5e-14 82.8 102 57.8
Nn4g22239 Nelumbo nucifera HOM05D003068 ORTHO05D003444 2.0e-14 82.4 96 58.3
Aqoxy5G03256 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 3.4e-14 81.6 100 56.0
Oeu011351.2 Olea europaea HOM05D003068 ORTHO05D003444 3.4e-14 81.6 107 53.3
CAN.G31.3 Capsicum annuum HOM05D003068 ORTHO05D003444 4.4e-14 81.3 97 56.7
PGSC0003DMG400002362 Solanum tuberosum HOM05D003068 ORTHO05D003444 4.4e-14 81.3 77 64.9
PGSC0003DMG400010805 Solanum tuberosum HOM05D003068 ORTHO05D003444 4.4e-14 81.3 77 64.9
TAR629G1943 Trochodendron aralioides HOM05D003068 ORTHO05D003444 4.4e-14 81.3 96 55.2
CSS0019564 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 1.3e-13 79.7 95 55.8
Solyc05g015920.3 Solanum lycopersicum HOM05D003068 ORTHO05D003444 1.3e-13 79.7 79 63.3
Solyc05g015930.4 Solanum lycopersicum HOM05D003068 ORTHO05D003444 1.3e-13 79.7 79 63.3
Sopen05g012000 Solanum pennellii HOM05D003068 ORTHO05D003444 1.3e-13 79.7 79 63.3
Sopen05g012020 Solanum pennellii HOM05D003068 ORTHO05D003444 1.3e-13 79.7 79 63.3
CAN.G75.8 Capsicum annuum HOM05D003068 ORTHO05D003444 1.7e-13 79.3 97 55.7
Oeu044470.1 Olea europaea HOM05D003068 ORTHO05D003444 1.7e-13 79.3 100 52.0
ClCG06G001930 Citrullus lanatus HOM05D003068 ORTHO05D003444 2.2e-13 79.0 82 65.9
SGA_v2.0_scaffold228G43258 Striga asiatica HOM05D003068 ORTHO05D003444 2.2e-13 79.0 98 51.0
SGA_v2.0_scaffold46G17427 Striga asiatica HOM05D003068 ORTHO05D003444 2.2e-13 79.0 78 62.8
TAR371G1274 Trochodendron aralioides HOM05D003068 ORTHO05D003444 2.2e-13 79.0 96 54.2
MD16G1124000 Malus domestica HOM05D003068 ORTHO05D003444 2.9e-13 78.6 98 51.0
vmacro16090 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 2.9e-13 78.6 94 53.2
Manes.12G007400 Manihot esculenta HOM05D003068 ORTHO05D003444 3.8e-13 78.2 96 62.5
SalBow2G3600 Salvia bowleyana HOM05D003068 ORTHO05D003444 3.8e-13 78.2 95 57.9
vmacro01043 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 3.8e-13 78.2 97 54.6
Ciclev10014024m.g Citrus clementina HOM05D003068 ORTHO05D003444 6.4e-13 77.4 91 53.8
Duzib251G0076 Durio zibethinus HOM05D003068 ORTHO05D003444 6.4e-13 77.4 81 58.0
PSO017G0558 Papaver somniferum HOM05D003068 ORTHO05D003444 6.4e-13 77.4 93 52.7
Actinidia08047 Actinidia chinensis HOM05D003068 ORTHO05D003444 8.4e-13 77.0 80 60.0
COL.COLO4_13296 Corchorus olitorius HOM05D003068 ORTHO05D003444 8.4e-13 77.0 94 51.1
PSO478G2322 Papaver somniferum HOM05D003068 ORTHO05D003444 8.4e-13 77.0 93 52.7
Sc14g0009170 Simmondsia chinensis HOM05D003068 ORTHO05D003444 8.4e-13 77.0 82 59.8
CsaV3_6G007980 Cucumis sativus L. HOM05D003068 ORTHO05D003444 1.1e-12 76.6 79 67.1
Manes.13G007800 Manihot esculenta HOM05D003068 ORTHO05D003444 1.1e-12 76.6 96 55.2
FvH4_4g23270 Fragaria vesca HOM05D003068 ORTHO05D003444 1.4e-12 76.3 82 58.5
FAN07G2860 Fragaria x ananassa HOM05D003068 ORTHO05D003444 1.4e-12 76.3 82 58.5
FAN12G3359 Fragaria x ananassa HOM05D003068 ORTHO05D003444 1.4e-12 76.3 82 58.5
MD13G1123200 Malus domestica HOM05D003068 ORTHO05D003444 1.4e-12 76.3 98 50.0
QL03p051306 Quercus lobata HOM05D003068 ORTHO05D003444 1.9e-12 75.9 103 59.2
Atru.chr11.2377 Acer truncatum HOM05D003068 ORTHO05D003444 2.4e-12 75.5 94 53.2
Prupe.1G221600 Prunus persica HOM05D003068 ORTHO05D003444 2.4e-12 75.5 102 52.0
MELO3C022336.2 Cucumis melo HOM05D003068 ORTHO05D003444 3.2e-12 75.1 79 65.8
Peaxi162Scf00128g01613 Petunia axillaris HOM05D003068 ORTHO05D003444 3.2e-12 75.1 92 60.9
TWI34G0873 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 3.2e-12 75.1 79 57.0
TWI34G1549 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 3.2e-12 75.1 79 57.0
Aa31LG3G14530 Aethionema arabicum HOM05D003068 ORTHO05D003444 4.2e-12 74.7 91 51.6
CiPaw.06G106100 Carya illinoinensis HOM05D003068 ORTHO05D003444 4.2e-12 74.7 94 59.6
FAN17G2511 Fragaria x ananassa HOM05D003068 ORTHO05D003444 4.2e-12 74.7 82 57.3
Lsat_1_v5_gn_4_161 Lactuca sativa HOM05D003068 ORTHO05D003444 4.2e-12 74.7 93 57.0
PGR102G3269 Punica granatum HOM05D003068 ORTHO05D003444 4.2e-12 74.7 96 56.2
CANSAT01G2060 Cannabis sativa HOM05D003068 ORTHO05D003444 5.4e-12 74.3 88 51.1
Sc11g0000320 Simmondsia chinensis HOM05D003068 ORTHO05D003444 5.4e-12 74.3 102 55.9
Nn3g16377 Nelumbo nucifera HOM05D003068 ORTHO05D003444 7.1e-12 73.9 94 51.1
RcHm_v2.0_Chr4g0429641 Rosa chinensis HOM05D003068 ORTHO05D003444 7.1e-12 73.9 102 52.9
EL10Ac6g13546 Beta vulgaris HOM05D003068 ORTHO05D003444 9.3e-12 73.6 94 62.8
Lalb_Chr00c01g0403831 Lupinus albus HOM05D003068 ORTHO05D003444 1.2e-11 73.2 96 51.0
MBI07_g02007_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 1.2e-11 73.2 79 58.2
TWI36G0350 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 1.2e-11 73.2 84 57.1
QL02p070794 Quercus lobata HOM05D003068 ORTHO05D003444 1.6e-11 72.8 90 51.1
Atru.chr6.2601 Acer truncatum HOM05D003068 ORTHO05D003444 2.1e-11 72.4 91 51.6
AL1G40620 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 2.1e-11 72.4 72 56.9
Duzib248G1470 Durio zibethinus HOM05D003068 ORTHO05D003444 2.7e-11 72.0 92 50.0
Gohir.A11G067700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 2.7e-11 72.0 94 45.7
THA.LOC104807415 Tarenaya hassleriana HOM05D003068 ORTHO05D003444 2.7e-11 72.0 73 57.5
unitig_749.g13315 Utricularia gibba HOM05D003068 ORTHO05D003444 2.7e-11 72.0 79 53.2
Actinidia39791 Actinidia chinensis HOM05D003068 ORTHO05D003444 4.6e-11 71.2 103 56.3
CARHR026790 Cardamine hirsuta HOM05D003068 ORTHO05D003444 4.6e-11 71.2 67 61.2
arahy.Tifrunner.gnm1.ann1.51F4P8 Arachis hypogaea HOM05D003068 ORTHO05D003444 6.0e-11 70.9 97 51.5
arahy.Tifrunner.gnm1.ann1.V6C9BH Arachis hypogaea HOM05D003068 ORTHO05D003444 6.0e-11 70.9 97 51.5
Rhsim12G0023100 Rhododendron simsii HOM05D003068 ORTHO05D003444 6.0e-11 70.9 96 56.2
TAR374G0446 Trochodendron aralioides HOM05D003068 ORTHO05D003444 6.0e-11 70.9 94 52.1
Gorai.007G071800 Gossypium raimondii HOM05D003068 ORTHO05D003444 7.8e-11 70.5 95 45.3
CDE05G0933 Ceratophyllum demersum HOM05D003068 ORTHO05D003444 1.0e-10 70.1 90 53.3
TWI18G0019 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 1.0e-10 70.1 100 49.0
CANSAT01G1374 Cannabis sativa HOM05D003068 ORTHO05D003444 1.7e-10 69.3 88 55.7
Glyma.19G095700 Glycine max HOM05D003068 ORTHO05D003444 1.7e-10 69.3 100 49.0
Gohir.D11G058700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 1.7e-10 69.3 95 45.3
Gorai.007G071700 Gossypium raimondii HOM05D003068 ORTHO05D003444 1.7e-10 69.3 95 45.3
Gohir.A11G062500 Gossypium hirsutum HOM05D003068 ORTHO05D003444 2.3e-10 68.9 95 45.3
MD09G1007900 Malus domestica HOM05D003068 ORTHO05D003444 2.3e-10 68.9 80 52.5
Rhsim12G0023200 Rhododendron simsii HOM05D003068 ORTHO05D003444 2.3e-10 68.9 91 59.3
Thecc.02G200100 Theobroma cacao HOM05D003068 ORTHO05D003444 2.3e-10 68.9 94 59.6
unitig_26.g10417 Utricularia gibba HOM05D003068 ORTHO05D003444 2.3e-10 68.9 85 51.8
Lalb_Chr21g0316891 Lupinus albus HOM05D003068 ORTHO05D003444 3.0e-10 68.6 77 53.2
AT1G24300 Arabidopsis thaliana HOM05D003068 ORTHO05D003444 3.9e-10 68.2 72 54.2
Cpa.g.sc360.6 Carica papaya HOM05D003068 ORTHO05D003444 3.9e-10 68.2 87 50.6
Duzib147G0957 Durio zibethinus HOM05D003068 ORTHO05D003444 3.9e-10 68.2 94 47.9
Lalb_Chr02g0156781 Lupinus albus HOM05D003068 ORTHO05D003444 3.9e-10 68.2 77 51.9
Cfa009397 Carpinus fangiana HOM05D003068 ORTHO05D003444 5.1e-10 67.8 99 56.6
Ca_26730_v3 Cicer arietinum L. HOM05D003068 ORTHO05D003444 5.1e-10 67.8 103 47.6
Gohir.D11G066300 Gossypium hirsutum HOM05D003068 ORTHO05D003444 5.1e-10 67.8 95 44.2
MD17G1002800 Malus domestica HOM05D003068 ORTHO05D003444 5.1e-10 67.8 90 43.3
Manes.04G088200 Manihot esculenta HOM05D003068 ORTHO05D003444 5.1e-10 67.8 101 43.6
Phvul.001G089500 Phaseolus vulgaris HOM05D003068 ORTHO05D003444 5.1e-10 67.8 110 45.5
Prupe.3G309100 Prunus persica HOM05D003068 ORTHO05D003444 5.1e-10 67.8 81 50.6
Thecc.04G040800 Theobroma cacao HOM05D003068 ORTHO05D003444 5.1e-10 67.8 93 53.8
CARHR027020 Cardamine hirsuta HOM05D003068 ORTHO05D003444 6.6e-10 67.4 68 61.8
Eucgr.B03531 Eucalyptus grandis HOM05D003068 ORTHO05D003444 6.6e-10 67.4 99 53.5
CDE05G1424 Ceratophyllum demersum HOM05D003068 ORTHO05D003444 8.7e-10 67.0 89 50.6
Gohir.D09G038700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 8.7e-10 67.0 94 48.9
Gorai.006G044200 Gossypium raimondii HOM05D003068 ORTHO05D003444 8.7e-10 67.0 94 48.9
Nitab4.5_0001771g0100 Nicotiana tabacum HOM05D003068 ORTHO05D003444 8.7e-10 67.0 87 55.2
Duzib264G0464 Durio zibethinus HOM05D003068 ORTHO05D003444 1.1e-09 66.6 99 44.4
FAN02G2301 Fragaria x ananassa HOM05D003068 ORTHO05D003444 1.5e-09 66.2 77 50.6
TPR.G8567 Trifolium pratense HOM05D003068 ORTHO05D003444 1.5e-09 66.2 96 45.8
GSVIVG01033051001 Vitis vinifera HOM05D003068 ORTHO05D003444 1.5e-09 66.2 97 47.4
Gohir.A09G037700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 1.9e-09 65.9 94 47.9
PSO478G5081 Papaver somniferum HOM05D003068 ORTHO05D003444 1.9e-09 65.9 102 44.1
RcHm_v2.0_Chr2g0176001 Rosa chinensis HOM05D003068 ORTHO05D003444 1.9e-09 65.9 79 51.9
TWI32G0157 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 1.9e-09 65.9 80 51.2
ATR0582G309 Amborella trichopoda HOM05D003068 ORTHO05D003444 2.5e-09 65.5 81 51.9
Nitab4.5_0004878g0010 Nicotiana tabacum HOM05D003068 ORTHO05D003444 2.5e-09 65.5 86 55.8
FAN09G1608 Fragaria x ananassa HOM05D003068 ORTHO05D003444 4.3e-09 64.7 77 49.4
FvH4_6g53851 Fragaria vesca HOM05D003068 ORTHO05D003444 5.6e-09 64.3 77 49.4
FAN05G1891 Fragaria x ananassa HOM05D003068 ORTHO05D003444 5.6e-09 64.3 77 49.4
FAN14G4132 Fragaria x ananassa HOM05D003068 ORTHO05D003444 5.6e-09 64.3 77 49.4
Lalb_Chr06g0173741 Lupinus albus HOM05D003068 ORTHO05D003444 5.6e-09 64.3 77 49.4
PSO017G1912 Papaver somniferum HOM05D003068 ORTHO05D003444 5.6e-09 64.3 102 44.1
Sabra17G0058900 Salix brachista HOM05D003068 ORTHO05D003444 5.6e-09 64.3 95 43.2
Sed0008887 Sechium edule HOM05D003068 ORTHO05D003444 5.6e-09 64.3 83 57.8
Carub.0001s2609 Capsella rubella HOM05D003068 ORTHO05D003444 7.3e-09 63.9 70 58.6
Migut.K01012 Erythranthe guttata HOM05D003068 ORTHO05D003444 7.3e-09 63.9 86 57.0
Potri.017G069220 Populus trichocarpa HOM05D003068 ORTHO05D003444 9.6e-09 63.5 96 46.9
Actinidia09620 Actinidia chinensis HOM05D003068 ORTHO05D003444 1.3e-08 63.2 103 55.3
Sabra16G0209200 Salix brachista HOM05D003068 ORTHO05D003444 1.3e-08 63.2 91 46.2
Oeu044469.1 Olea europaea HOM05D003068 ORTHO05D003444 1.6e-08 62.8 91 49.5
Carub.0001s2597 Capsella rubella HOM05D003068 ORTHO05D003444 2.8e-08 62.0 70 57.1
Zm00001eb364080 Zea mays HOM05D003068 ORTHO05D003444 2.8e-08 62.0 79 48.1
Lsat_1_v5_gn_7_52881 Lactuca sativa HOM05D003068 ORTHO05D003444 3.6e-08 61.6 31 93.5
Potri.001G326500 Populus trichocarpa HOM05D003068 ORTHO05D003444 8.1e-08 60.5 90 45.6
MBI11_g31939_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 1.1e-07 60.1 31 87.1
MBI11_g38271_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 1.1e-07 60.1 31 87.1
Os01g0924600 Oryza sativa ssp. japonica HOM05D003068 ORTHO05D003444 1.1e-07 60.1 87 52.9
Ciclev10030493m.g Citrus clementina HOM05D003068 ORTHO05D003444 1.4e-07 59.7 96 53.1
Medtr7g027680 Medicago truncatula HOM05D003068 ORTHO05D003444 1.4e-07 59.7 96 51.0
Sed0000746 Sechium edule HOM05D003068 ORTHO05D003444 1.4e-07 59.7 78 59.0
SEGI_16901 Sequoiadendron giganteum HOM05D003068 ORTHO05D003444 1.4e-07 59.7 45 64.4
BcaB03g12076 Brassica carinata HOM05D003068 ORTHO05D003444 1.8e-07 59.3 75 53.3
BolC3t19659H Brassica oleracea HOM05D003068 ORTHO05D003444 1.8e-07 59.3 78 51.3
Lalb_Chr22g0360251 Lupinus albus HOM05D003068 ORTHO05D003444 2.4e-07 58.9 100 50.0
COL.COLO4_13295 Corchorus olitorius HOM05D003068 ORTHO05D003444 4.0e-07 58.2 94 50.0
AL1G40840 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 5.3e-07 57.8 30 86.7
CSS0012326 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 6.9e-07 57.4 79 59.5
Lj1g0008700 Lotus japonicus HOM05D003068 ORTHO05D003444 6.9e-07 57.4 91 52.7
GSVIVG01000921001 Vitis vinifera HOM05D003068 ORTHO05D003444 6.9e-07 57.4 83 54.2
A08p26380 Brassica napus HOM05D003068 ORTHO05D003444 9.0e-07 57.0 30 83.3
Sabra16G0209000 Salix brachista HOM05D003068 ORTHO05D003444 9.0e-07 57.0 73 47.9
SalBow8G0890 Salvia bowleyana HOM05D003992 ORTHO05D004329 9.0e-07 57.0 90 42.2
Haze_12457 Corylus avellana HOM05D003068 ORTHO05D003444 1.2e-06 56.6 89 55.1
Potri.001G326700 Populus trichocarpa HOM05D003068 ORTHO05D003444 1.2e-06 56.6 84 46.4
Aqoxy3G01640 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 1.5e-06 56.2 80 46.2
arahy.Tifrunner.gnm1.ann1.L0KAFE Arachis hypogaea HOM05D003992 ORTHO05D004329 1.5e-06 56.2 68 45.6
arahy.Tifrunner.gnm1.ann1.P6P9CF Arachis hypogaea HOM05D003992 ORTHO05D004329 1.5e-06 56.2 68 45.6
BcaB03g12075 Brassica carinata HOM05D003068 ORTHO05D003444 1.5e-06 56.2 75 53.3
Thhalv10006550m.g Eutrema salsugineum HOM05D003068 ORTHO05D003444 3.4e-06 55.1 30 80.0
Thhalv10006556m.g Eutrema salsugineum HOM05D003068 ORTHO05D003444 3.4e-06 55.1 30 80.0
Sc02g0006250 Simmondsia chinensis HOM05D003992 ORTHO05D004329 3.4e-06 55.1 67 44.8
Glyma.16G053500 Glycine max HOM05D003068 ORTHO05D003444 4.4e-06 54.7 101 48.5
CANSAT25G0428 Cannabis sativa HOM05D003992 ORTHO05D004329 5.8e-06 54.3 82 41.5
HPP92_018700 Vanilla planifolia HOM05D003992 ORTHO05D004329 5.8e-06 54.3 90 35.6
HPP92_018813 Vanilla planifolia HOM05D003992 ORTHO05D004329 5.8e-06 54.3 90 35.6
AUR62038829 Chenopodium quinoa HOM05D003992 ORTHO05D004329 9.9e-06 53.5 62 45.2
MD08G1034300 Malus domestica HOM05D003992 ORTHO05D004329 9.9e-06 53.5 89 40.4
TAR454G0002 Trochodendron aralioides HOM05D000127 ORTHO05D003444 9.9e-06 53.5 79 49.4


User provided reference genes

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