Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 9.3e-56 219.9 108 100.0
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 8.2e-44 180.3 101 87.1
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 5.8e-42 174.1 102 83.3
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 1.0e-41 173.3 102 83.3
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 1.3e-41 172.9 104 83.7
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 2.9e-41 171.8 101 83.2
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 6.5e-41 170.6 101 83.2
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 6.5e-41 170.6 101 82.2
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 1.1e-40 169.9 102 80.4
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 1.1e-40 169.9 101 82.2
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 1.1e-40 169.9 101 82.2
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 1.4e-40 169.5 102 81.4
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 1.4e-40 169.5 102 81.4
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 1.4e-40 169.5 102 81.4
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 1.4e-40 169.5 102 81.4
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 1.4e-40 169.5 101 82.2
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 1.4e-40 169.5 102 81.4
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 1.9e-40 169.1 101 82.2
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 1.9e-40 169.1 101 81.2
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 1.9e-40 169.1 102 80.4
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 3.2e-40 168.3 101 81.2
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 3.2e-40 168.3 96 85.4
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 3.2e-40 168.3 102 80.4
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 4.2e-40 167.9 101 81.2
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 4.2e-40 167.9 101 81.2
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 5.5e-40 167.5 101 81.2
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 5.5e-40 167.5 101 81.2
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 5.5e-40 167.5 101 81.2
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 5.5e-40 167.5 101 81.2
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 7.1e-40 167.2 101 81.2
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 7.1e-40 167.2 96 84.4
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 7.1e-40 167.2 96 85.4
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 9.3e-40 166.8 101 80.2
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 9.3e-40 166.8 101 80.2
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.6e-39 166.0 96 84.4
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 1.6e-39 166.0 102 80.4
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 2.1e-39 165.6 101 79.2
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 2.7e-39 165.2 101 81.2
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 3.5e-39 164.9 96 83.3
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 3.5e-39 164.9 96 83.3
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 3.5e-39 164.9 115 73.0
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 3.5e-39 164.9 100 80.0
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 4.6e-39 164.5 96 84.4
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 4.6e-39 164.5 102 78.4
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 4.6e-39 164.5 108 75.9
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 6.0e-39 164.1 100 81.0
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 6.0e-39 164.1 101 78.2
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 6.0e-39 164.1 96 82.3
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 6.0e-39 164.1 96 82.3
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 6.0e-39 164.1 101 78.2
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 1.0e-38 163.3 101 78.2
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 1.3e-38 162.9 96 82.3
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 1.3e-38 162.9 100 80.0
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 1.3e-38 162.9 101 77.2
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 1.8e-38 162.5 101 78.2
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 1.8e-38 162.5 96 83.3
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 1.8e-38 162.5 96 82.3
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 1.8e-38 162.5 96 81.2
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 2.3e-38 162.2 96 81.2
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 2.3e-38 162.2 101 77.2
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 2.3e-38 162.2 101 78.2
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 3.0e-38 161.8 101 77.2
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 3.0e-38 161.8 101 77.2
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 3.0e-38 161.8 101 77.2
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 3.0e-38 161.8 101 78.2
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 3.9e-38 161.4 102 78.4
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 3.9e-38 161.4 101 78.2
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 3.9e-38 161.4 101 77.2
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 3.9e-38 161.4 96 80.2
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 5.1e-38 161.0 101 77.2
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.1e-38 161.0 101 77.2
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.1e-38 161.0 101 77.2
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.1e-38 161.0 101 77.2
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 6.7e-38 160.6 101 78.2
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 6.7e-38 160.6 101 78.2
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 8.7e-38 160.2 96 79.2
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 8.7e-38 160.2 101 78.2
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 1.1e-37 159.8 96 80.2
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.1e-37 159.8 101 77.2
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 1.1e-37 159.8 101 76.2
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.5e-37 159.5 96 80.2
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 1.5e-37 159.5 96 80.2
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 1.5e-37 159.5 96 80.2
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 1.5e-37 159.5 101 78.2
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 1.5e-37 159.5 96 80.2
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 1.9e-37 159.1 96 79.2
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 1.9e-37 159.1 104 75.0
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 2.5e-37 158.7 96 82.3
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 2.5e-37 158.7 96 81.2
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 2.5e-37 158.7 96 81.2
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 7.4e-37 157.1 104 76.0
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 7.4e-37 157.1 103 75.7
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 7.4e-37 157.1 96 78.1
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 9.7e-37 156.8 96 81.2
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 1.6e-36 156.0 104 75.0
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 2.2e-36 155.6 96 78.1
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.8e-36 155.2 101 76.2
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 6.9e-35 150.6 128 63.3
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 1.5e-34 149.4 103 71.8
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 4.5e-34 147.9 96 75.0
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 1.0e-33 146.7 96 76.0
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 1.7e-33 146.0 95 75.8
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 1.7e-33 146.0 95 75.8
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 3.8e-33 144.8 96 76.0
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 6.5e-33 144.1 96 75.0
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 6.5e-33 144.1 96 76.0
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 7.2e-32 140.6 133 59.4
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.4e-30 136.3 78 85.9
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.8e-30 136.0 87 77.0
Mapoly0009s0010 Marchantia polymorpha HOM05D002801 ORTHO05D003002 8.8e-30 133.7 116 58.6
SHI12444 Sapria himalayana HOM05D002801 ORTHO05D003002 1.2e-26 123.2 144 50.0
CBR_g26407 Chara braunii HOM05D002801 ORTHO05D003002 4.5e-26 121.3 92 63.0
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 2.9e-25 118.6 68 80.9
SMO116G0270 Selaginella moellendorffii HOM05D002801 ORTHO05D003002 2.9e-25 118.6 96 60.4
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 9.4e-24 113.6 96 64.6
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 3.3e-21 105.1 101 57.4
Zm00001eb010280 Zea mays HOM05D002801 ORTHO05D003002 6.9e-19 97.4 68 70.6
AUR62044138 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.3e-17 93.2 63 71.4
CSS0037052 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 2.9e-17 92.0 53 86.8
Zm00001eb058920 Zea mays HOM05D002801 ORTHO05D003002 2.7e-15 85.5 104 51.0
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 2.6e-13 79.0 96 51.0
CSS0021053 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 7.0e-11 70.9 47 70.2
A04p28250 Brassica napus HOM05D002801 ORTHO05D003002 3.2e-08 62.0 37 83.8
SGA_v2.0_scaffold112G31671 Striga asiatica HOM05D002801 ORTHO05D003002 9.4e-08 60.5 71 47.9


User provided reference genes

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