Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 3231.8 1624 100.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2979.5 1620 91.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2970.3 1618 91.7
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2518.0 1594 78.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2479.9 1596 77.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2446.8 1606 76.0
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2442.5 1608 76.7
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2434.8 1601 75.6
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2429.1 1635 75.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2428.7 1608 75.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2426.4 1608 75.2
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2416.3 1600 76.0
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2410.9 1603 75.2
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2404.0 1597 75.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2404.0 1610 74.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2395.9 1600 74.7
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2384.0 1601 74.6
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2376.3 1609 73.5
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2374.7 1618 72.9
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1602 74.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2365.1 1622 72.9
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2362.8 1608 73.4
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2357.4 1609 73.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2356.6 1597 73.2
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2353.9 1496 78.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2347.8 1605 72.8
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2337.4 1611 71.9
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2330.8 1617 71.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2330.4 1617 72.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2324.7 1590 73.4
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1615 71.7
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2320.8 1605 72.5
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2305.4 1616 71.5
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2304.6 1616 71.7
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2303.5 1619 72.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2298.5 1617 70.8
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2292.7 1661 70.3
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2286.5 1582 72.0
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2282.7 1616 71.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2281.1 1637 69.9
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2277.3 1638 69.7
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2275.4 1623 70.2
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2273.8 1506 74.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2256.5 1592 69.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2256.5 1598 70.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2254.2 1598 70.4
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2250.3 1600 70.2
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1596 70.4
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2248.8 1592 69.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2247.6 1613 70.6
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2239.9 1589 71.6
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2225.3 1610 69.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2218.4 1912 61.9
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2215.7 1597 68.9
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2211.4 1616 69.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2208.3 1614 68.9
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2204.5 1616 69.2
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2196.8 1630 69.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2193.3 1619 69.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2190.6 1611 68.8
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2189.1 1613 69.6
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2188.7 1616 68.4
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2186.8 1602 69.3
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2184.5 1596 69.4
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2181.8 1600 68.9
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2179.8 1642 68.6
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1613 68.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2167.9 1442 74.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2156.7 1588 67.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2152.9 1603 68.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2150.9 1500 71.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2150.2 1603 68.1
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2147.9 1607 67.8
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2147.1 1607 67.8
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2120.9 1419 73.7
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2120.5 1603 67.1
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2119.7 1596 67.4
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2118.6 1606 66.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2112.4 1555 69.5
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2111.6 1603 67.2
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2109.0 1605 66.9
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2105.9 1603 66.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2068.9 1633 65.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2065.8 1601 66.2
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2043.9 1940 56.7
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2020.0 1623 65.1
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2012.3 1376 73.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1988.8 1410 72.6
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1986.5 1584 63.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1963.0 1609 63.0
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1963.0 1450 68.5
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1954.5 1614 62.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1847.8 1196 76.1
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1764.6 1577 60.4
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1701.0 1227 71.2
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1637.1 1098 73.7
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1636.3 1413 62.3
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1540.0 1371 60.6
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1505.0 979 76.4
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1465.7 969 75.3
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1427.5 1619 48.0
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1379.0 1203 58.0
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1371.3 1612 46.4
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1326.6 1585 45.9
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1262.7 1068 61.4
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1155.6 1602 44.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1099.0 730 73.8
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.7e-281 972.6 644 75.5
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 9.4e-261 904.8 648 69.8
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 7.8e-239 832.0 585 72.1
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-238 830.9 603 70.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-237 827.0 591 71.2
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 4.6e-231 806.2 601 68.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 2.1e-220 770.8 638 62.5
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.3e-209 734.9 532 69.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-206 724.5 503 73.2
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.6e-194 684.1 518 68.0
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.9e-192 677.9 503 69.4
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 4.0e-187 660.2 643 55.1
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.8e-182 644.8 552 62.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 8.2e-180 636.0 514 63.8
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.2e-172 611.3 515 62.9
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 3.2e-168 597.4 466 66.3
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.5e-162 578.6 412 72.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-152 545.8 332 79.2
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 6.1e-151 540.0 483 56.3
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.6e-127 461.1 308 75.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 4.1e-123 447.6 370 64.1
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 3.3e-120 438.0 325 71.7
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 9.5e-120 436.4 296 74.3
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 3.7e-116 424.5 318 68.9
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.0e-113 414.1 316 68.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.6e-109 401.7 396 55.1
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.8e-109 400.6 369 57.2
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.9e-108 398.3 246 76.4
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.1e-107 396.4 398 53.3
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.1e-89 334.3 247 66.0
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 2.4e-70 272.3 163 79.8
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.3e-70 271.2 161 80.1
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 3.5e-66 258.5 211 65.4
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 5.5e-59 234.6 142 76.1
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 6.1e-58 231.1 141 78.7
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.4e-48 198.4 146 67.1
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.4e-48 198.4 210 54.3
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.1e-43 183.7 118 73.7
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 3.7e-39 168.7 129 66.7
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.4e-38 166.8 102 76.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.6e-37 162.5 139 61.2
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.3e-36 160.2 101 73.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.2e-36 159.5 93 79.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 8.0e-34 151.0 97 68.0
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.8e-31 142.5 143 54.5
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 143 54.5
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 143 54.5
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 143 54.5
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 143 54.5
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 143 54.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 53.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.8e-30 139.8 143 53.8
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.5e-24 120.2 84 65.5
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.5e-24 120.2 91 63.7
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.2e-23 116.3 130 50.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-23 115.5 130 50.0
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.2e-20 106.3 98 58.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 6.5e-20 104.8 108 49.1
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 1.1e-19 104.0 108 48.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 9.8e-16 90.9 74 58.1
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 2.4e-14 86.3 51 72.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-13 83.6 82 52.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 7.8e-13 81.3 56 71.4
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.9e-12 79.3 55 67.3
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 8.6e-12 77.8 54 68.5
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 8.0e-10 71.2 42 73.8
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.8e-09 70.1 50 64.0
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 5.2e-09 68.6 182 32.4
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.5e-08 67.0 49 65.3


User provided reference genes

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