Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.8e-167 592.4 284 100.0
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 6.9e-151 537.3 284 89.4
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 8.5e-141 503.8 280 82.9
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 7.4e-137 490.7 284 84.9
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 9.7e-137 490.3 280 80.7
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 4.1e-135 485.0 284 79.9
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 4.1e-135 485.0 277 81.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 6.9e-135 484.2 284 79.6
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.6e-134 482.3 284 78.5
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 5.9e-134 481.1 284 80.6
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.7e-133 479.6 283 79.5
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 5.0e-133 478.0 284 78.2
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.1e-132 476.9 283 78.8
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.1e-132 476.9 280 78.9
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.9e-132 476.1 284 77.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 5.5e-132 474.6 283 77.4
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 9.4e-132 473.8 280 79.3
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 2.1e-131 472.6 284 77.8
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.7e-131 472.2 284 78.2
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.7e-131 471.5 277 79.4
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 6.1e-131 471.1 284 77.1
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 6.1e-131 471.1 280 77.5
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 7.9e-131 470.7 280 77.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 7.9e-131 470.7 284 78.5
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 2.3e-130 469.2 284 78.5
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 3.0e-130 468.8 284 75.7
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.9e-130 468.4 282 77.0
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 8.8e-130 467.2 284 76.8
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.1e-129 466.8 281 75.8
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.5e-129 466.5 283 77.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.0e-129 466.1 283 78.4
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.6e-129 465.7 284 78.5
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.3e-129 465.3 286 78.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.4e-129 464.9 282 76.6
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 4.4e-129 464.9 284 75.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 5.7e-129 464.5 284 76.8
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.4e-129 464.2 281 76.5
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 7.4e-129 464.2 283 76.0
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.2e-128 462.6 284 77.8
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.8e-128 462.2 283 76.7
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 3.7e-128 461.8 283 76.7
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 3.7e-128 461.8 281 75.1
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 4.8e-128 461.5 284 77.1
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 8.2e-128 460.7 278 75.5
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.4e-127 459.9 284 75.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.8e-127 459.5 284 76.4
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.8e-127 459.5 281 74.4
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.1e-127 458.8 281 74.4
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 3.1e-127 458.8 283 76.3
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 9.1e-127 457.2 281 76.2
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 9.1e-127 457.2 284 76.4
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 2.0e-126 456.1 284 75.4
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.5e-126 455.3 284 75.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 4.5e-126 454.9 284 75.7
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 7.7e-126 454.1 284 76.4
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 74.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.3e-125 453.4 283 75.6
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 3.8e-125 451.8 284 76.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.8e-125 451.8 269 77.7
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 3.8e-125 451.8 283 76.0
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 5.0e-125 451.4 281 75.1
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 5.0e-125 451.4 281 75.1
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 6.5e-125 451.1 309 70.9
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 6.5e-125 451.1 281 74.4
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 6.5e-125 451.1 284 75.7
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 8.5e-125 450.7 284 76.1
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.1e-124 450.3 270 78.5
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.5e-124 449.1 281 74.0
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.5e-124 449.1 281 74.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 3.2e-124 448.7 289 74.0
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 3.2e-124 448.7 289 73.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 282 73.4
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 281 72.6
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 7.2e-124 447.6 281 75.1
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.1e-123 446.0 282 74.1
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 2.7e-123 445.7 281 73.7
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 2.7e-123 445.7 281 75.1
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 2.7e-123 445.7 284 73.2
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.7e-123 444.9 282 73.4
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 6.1e-123 444.5 281 73.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.0e-122 443.7 270 77.8
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.4e-122 443.4 282 72.7
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 6.7e-122 441.0 281 73.3
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 280 72.5
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 7.0e-119 431.0 271 74.9
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.0e-118 429.5 314 66.9
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.6e-118 429.1 276 72.8
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.3e-117 426.8 265 75.5
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.9e-117 425.6 284 71.5
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.9e-117 425.6 284 71.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.9e-116 422.9 294 70.1
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.2e-115 420.2 250 76.4
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.6e-113 412.5 251 76.9
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.3e-112 410.2 270 71.5
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.8e-111 406.4 281 66.9
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 9.1e-111 404.1 281 67.3
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 3.5e-110 402.1 263 72.2
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 8.5e-109 397.5 236 78.8
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 1.8e-106 389.8 251 70.1
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-106 389.8 251 69.7
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 9.8e-105 384.0 266 68.0
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 2.4e-103 379.4 264 65.9
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 5.4e-103 378.3 284 65.5
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.2e-96 356.3 248 65.7
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.0e-93 347.4 421 45.8
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.1e-92 344.0 277 59.2
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 9.5e-92 340.9 282 58.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.1e-90 335.9 190 80.0
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.2e-88 329.7 282 58.2
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.0e-85 318.5 406 44.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 5.0e-85 318.5 269 59.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 8.1e-83 311.2 267 57.7
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 9.2e-79 297.7 309 50.2
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.9e-76 290.0 144 88.2
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.6e-75 287.0 167 75.4
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.1e-74 284.3 167 74.9
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.2e-73 280.8 176 71.0
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.5e-73 280.4 180 68.3
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 4.4e-73 278.9 277 49.5
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 5.1e-69 265.4 295 47.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 5.4e-63 245.4 163 68.1
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 5.1e-61 238.8 290 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.5e-57 227.3 147 67.3
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.6e-57 226.5 248 48.8
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.1e-55 221.1 135 77.8
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 7.4e-52 208.4 143 72.7
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 3.1e-50 203.0 248 45.6
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.5e-47 192.2 156 60.3
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.1e-42 177.9 221 43.0
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.9e-31 140.6 110 59.1
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.2e-31 139.8 77 80.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 9.7e-28 128.3 70 80.0
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.6e-27 127.5 72 73.6
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.6e-27 127.5 72 73.6
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 7.9e-22 108.6 80 65.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.3e-21 107.1 80 65.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 8.8e-21 105.1 92 57.6
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.7e-20 102.4 75 68.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.4e-20 102.1 76 67.1
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.4e-17 93.2 96 54.2
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.0e-16 91.7 65 66.2
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.2e-15 85.5 85 52.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 2.2e-08 63.9 174 28.2
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 7.2e-07 58.9 55 56.4
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 2.7e-06 57.0 271 24.0


User provided reference genes

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