Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.9e-245 852.0 430 100.0
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-131 473.8 501 53.1
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.0e-129 467.6 477 54.3
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.5e-125 453.8 479 51.4
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 5.8e-125 451.8 494 53.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.3e-124 448.0 485 52.4
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-122 444.1 492 52.2
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.0e-121 441.0 487 49.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 5.6e-120 435.3 478 50.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.8e-119 433.0 470 49.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 8.1e-119 431.4 470 49.8
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.4e-118 430.6 320 65.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 4.0e-118 429.1 317 66.9
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 4.0e-118 429.1 503 48.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 5.2e-118 428.7 478 48.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 6.8e-118 428.3 475 49.7
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 8.9e-118 427.9 491 48.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.2e-117 427.6 488 48.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.2e-117 427.6 482 49.0
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.6e-117 426.4 486 47.9
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 5.8e-117 425.2 331 63.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 7.6e-117 424.9 470 49.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 9.9e-117 424.5 522 47.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 9.9e-117 424.5 452 50.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.3e-116 424.1 492 47.8
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.3e-116 424.1 473 48.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.7e-116 423.7 508 46.7
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.8e-116 422.5 515 46.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.4e-116 421.8 489 47.6
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.4e-116 421.4 475 50.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 8.4e-116 421.4 481 48.4
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-115 421.0 486 47.7
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-115 420.2 464 49.4
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.9e-115 420.2 517 46.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.2e-115 419.1 478 48.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.2e-114 417.5 490 49.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-114 417.5 482 47.9
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.7e-114 416.4 485 47.0
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.5e-114 416.0 487 46.8
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.5e-114 416.0 319 63.0
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.8e-114 414.8 445 50.6
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 7.8e-114 414.8 502 46.8
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-113 414.1 459 48.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.3e-113 413.3 490 46.9
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.0e-113 412.9 316 62.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.6e-113 411.8 325 62.8
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 8.7e-113 411.4 508 45.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 8.7e-113 411.4 477 48.4
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.1e-112 411.0 476 47.1
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.9e-112 410.2 438 48.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-112 410.2 328 61.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.9e-112 410.2 477 47.8
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.5e-112 409.8 435 50.3
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.3e-112 409.5 321 62.9
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.6e-112 408.7 328 61.6
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.6e-112 408.7 491 45.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 5.6e-112 408.7 321 61.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.6e-112 408.7 488 46.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-111 407.5 474 48.9
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.6e-111 407.1 320 61.2
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-111 407.1 477 48.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.1e-111 406.8 470 47.0
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.1e-111 406.8 460 48.0
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.8e-111 406.4 328 61.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.8e-111 406.4 474 47.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.8e-111 405.6 505 45.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 6.2e-111 405.2 482 46.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.1e-110 404.4 320 61.6
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.4e-110 404.1 445 47.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-110 404.1 482 46.7
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.8e-110 403.7 487 45.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.0e-110 402.5 446 47.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.0e-110 402.5 489 45.4
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.3e-110 402.1 321 62.9
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 6.9e-110 401.7 517 44.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.9e-110 401.7 474 46.6
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 9.0e-110 401.4 322 61.5
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.2e-109 401.0 450 47.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-109 400.6 473 46.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.5e-109 400.6 316 62.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.4e-109 399.4 477 47.0
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 3.4e-109 399.4 563 42.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.8e-109 398.7 452 50.2
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.6e-109 398.3 460 46.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 9.9e-109 397.9 450 48.4
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.3e-108 397.5 467 46.5
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.2e-108 396.7 530 44.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.2e-108 396.7 321 61.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.9e-108 396.4 323 59.1
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.9e-108 396.4 494 45.5
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.4e-108 395.2 507 45.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.4e-108 395.2 313 62.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.1e-107 391.7 485 44.9
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-106 390.2 321 59.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 3.5e-106 389.4 343 57.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-105 386.7 469 46.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.5e-104 383.3 305 57.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-104 383.3 462 44.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.5e-104 383.3 462 45.0
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.6e-104 382.1 322 59.3
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.6e-103 379.4 314 59.2
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 8.1e-103 378.3 464 45.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.6e-101 373.2 472 44.9
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.6e-101 371.7 275 62.5
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.9e-101 371.3 358 53.4
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.7e-100 370.5 441 43.8
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 8.4e-100 368.2 322 55.3
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.9e-99 367.1 329 53.8
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.3e-97 360.9 461 43.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 3.0e-97 359.8 304 58.6
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.0e-97 359.8 321 54.2
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.0e-97 359.8 463 45.1
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.1e-97 359.0 326 51.5
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.5e-96 356.7 257 65.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.2e-95 352.1 560 39.8
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.1e-94 349.7 467 42.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 3.4e-93 346.3 462 41.1
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.5e-91 340.1 474 42.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.1e-88 331.3 309 52.8
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 1.5e-88 330.9 329 49.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.3e-88 329.7 330 50.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.3e-88 329.7 330 50.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-87 326.2 327 49.5
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 3.7e-87 326.2 327 49.5
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.8e-87 325.9 315 51.1
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 8.2e-87 325.1 426 44.1
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.1e-86 324.7 315 50.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-86 324.7 311 50.8
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.4e-86 324.3 279 54.8
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.0e-86 322.8 318 50.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-85 321.2 310 51.3
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.2e-84 317.0 308 49.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.2e-84 317.0 237 61.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.0e-84 315.8 227 63.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.5e-84 315.5 431 42.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.2e-82 311.2 459 43.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.1e-82 310.5 356 44.1
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.5e-82 309.7 406 42.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-82 309.3 319 48.3
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 4.6e-82 309.3 319 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 7.9e-82 308.5 279 50.5
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.0e-81 306.6 318 48.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.0e-81 306.6 318 48.1
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.5e-80 304.3 261 53.6
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.7e-76 290.8 257 58.4
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.1e-74 283.9 204 64.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.4e-73 281.2 191 69.1
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.3e-70 269.2 186 63.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 2.0e-69 267.3 243 54.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.9e-65 253.1 264 46.6
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.3e-63 248.1 169 69.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.2e-63 245.4 170 68.8
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.5e-35 154.8 128 57.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 7.2e-35 152.5 227 37.4
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 9.5e-35 152.1 124 57.3
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.2e-34 151.8 277 37.5
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 4.0e-33 146.7 332 33.7
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.9e-33 145.6 88 73.9
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 4.9e-31 139.8 297 33.7
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 5.4e-30 136.3 152 47.4
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 9.5e-27 125.6 480 27.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-24 118.2 67 80.6
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.4e-23 112.8 62 82.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 6.4e-23 112.8 83 65.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.0e-21 107.8 65 76.9
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.5e-21 107.1 83 60.2
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 6.0e-21 106.3 91 52.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.9e-20 103.6 93 49.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-20 102.8 61 75.4
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 3.6e-18 97.1 249 31.3
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.6e-08 62.8 215 32.1


User provided reference genes

Program Settings