Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 3.1e-193 678.3 346 100.0
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 2.9e-143 512.3 346 74.9
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 4.4e-123 445.3 319 70.2
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 2.7e-101 372.9 346 56.6
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 6.8e-100 368.2 346 55.8
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 2.4e-97 359.8 346 53.5
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 3.1e-97 359.4 355 53.0
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 2.0e-96 356.7 317 56.8
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 7.7e-96 354.8 346 56.4
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 2.9e-95 352.8 346 52.3
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 6.6e-95 351.7 329 55.9
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 6.6e-95 351.7 318 56.3
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 8.6e-95 351.3 319 55.5
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.5e-94 350.5 318 56.0
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.1e-93 346.7 348 53.4
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 4.7e-93 345.5 346 54.0
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 6.1e-93 345.1 347 52.7
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 8.0e-93 344.7 348 52.9
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 8.0e-93 344.7 348 52.6
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.8e-92 343.6 318 55.7
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 5.2e-92 342.0 320 53.8
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 6.8e-92 341.7 325 52.6
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.2e-91 340.9 300 57.0
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.5e-91 340.5 298 57.0
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 2.6e-91 339.7 346 53.5
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 7.5e-91 338.2 319 54.2
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 9.8e-91 337.8 350 52.6
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 1.7e-90 337.0 317 54.3
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.7e-90 337.0 348 54.3
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.7e-90 337.0 317 53.0
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 3.7e-90 335.9 333 51.7
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 4.9e-90 335.5 317 54.6
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 8.3e-90 334.7 346 50.6
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 1.1e-89 334.3 346 53.5
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 1.1e-89 334.3 346 52.0
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.4e-89 334.0 346 53.2
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.1e-89 332.8 321 52.0
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 9.2e-89 331.3 346 52.3
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 9.2e-89 331.3 346 50.9
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 4.5e-88 328.9 321 52.3
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.5e-86 323.9 346 50.3
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.2e-85 320.9 346 50.0
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.2e-85 320.9 321 51.4
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 1.6e-85 320.5 346 49.4
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.1e-85 320.1 344 52.3
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 2.1e-85 320.1 304 56.9
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 2.1e-85 320.1 351 50.4
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 4.7e-85 318.9 342 52.6
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.0e-84 317.8 321 51.4
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.8e-84 317.0 346 49.4
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 1.5e-83 313.9 328 50.0
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 2.0e-83 313.5 346 48.3
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.4e-83 312.8 346 48.6
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 4.4e-83 312.4 346 49.7
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 9.8e-83 311.2 318 50.6
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 1.3e-82 310.8 329 52.9
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 4.9e-82 308.9 321 49.8
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 6.4e-82 308.5 346 48.0
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.4e-81 307.4 343 47.8
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.4e-81 307.4 317 50.8
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 1.2e-80 304.3 321 52.6
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.0e-79 301.2 346 47.1
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 8.6e-79 298.1 346 48.3
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 8.0e-77 291.6 343 47.2
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.1e-76 291.2 341 47.8
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 4.0e-76 289.3 346 46.5
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 4.0e-76 289.3 321 48.6
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 8.9e-76 288.1 346 46.2
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 4.4e-75 285.8 346 45.7
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 5.8e-75 285.4 346 45.7
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 7.5e-75 285.0 349 46.1
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 7.5e-75 285.0 346 45.7
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 9.8e-75 284.6 346 45.7
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 9.8e-75 284.6 346 45.7
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 1.7e-74 283.9 346 46.0
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 2.9e-74 283.1 346 45.4
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 2.9e-74 283.1 347 46.4
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 1.1e-73 281.2 340 46.5
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 2.4e-73 280.0 346 44.8
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 2.4e-73 280.0 346 44.8
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 4.1e-73 279.3 317 47.6
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.1e-72 276.9 330 45.5
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.7e-72 276.6 329 45.3
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 3.5e-72 276.2 341 45.7
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.0e-71 274.6 316 46.5
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 1.0e-71 274.6 348 44.8
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.6e-69 267.3 320 46.2
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 4.0e-68 262.7 326 47.2
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 4.9e-66 255.8 321 49.5
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 6.2e-61 238.8 342 40.9
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 6.2e-61 238.8 225 53.8
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 8.4e-58 228.4 220 52.3
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.3e-50 204.5 231 45.9
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 4.0e-44 183.0 160 58.1
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 5.4e-41 172.6 162 53.1
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.9e-38 164.1 153 53.6
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 9.0e-36 155.2 166 48.2
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 7.1e-25 119.0 215 38.1
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 9.3e-25 118.6 183 42.1
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 2.1e-24 117.5 135 45.9
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 7.9e-24 115.5 113 51.3
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 9.0e-20 102.1 99 52.5
HanXRQChr11g0330711 Helianthus annuus HOM05D052795 ORTHO05D227215 1.7e-18 97.8 57 87.7
HanXRQChr15g0488751 Helianthus annuus HOM05D052795 ORTHO05D223340 6.7e-15 85.9 53 88.7
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.3e-13 81.6 139 36.0
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.2e-13 80.9 105 44.8
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 3.6e-08 63.5 183 26.8
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 8.8e-07 58.9 77 45.5
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 5.7e-06 56.2 172 26.2
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 7.4e-06 55.8 109 27.5


User provided reference genes

Program Settings