Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 4814.2 2368 100.0
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 3148.6 2292 70.7
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 2986.4 2378 65.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2595.5 2553 54.3
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2538.5 2550 53.4
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2367.8 2545 50.8
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2361.3 2493 51.3
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2309.3 2595 49.6
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2303.1 2541 49.9
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2295.8 2572 48.9
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2292.7 2549 48.3
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2285.8 2549 48.3
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2277.3 2545 48.4
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2275.4 2556 48.0
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2273.8 2548 48.2
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2272.7 2549 48.1
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2270.7 2548 48.1
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2266.5 2562 48.4
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2236.8 2555 48.6
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2235.7 2512 48.2
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2234.9 2611 47.1
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2234.5 2533 48.2
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2229.9 2510 48.6
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2227.2 2558 48.4
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2226.8 2512 48.1
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2223.0 2561 47.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2221.8 2524 47.9
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2201.8 2551 47.9
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2199.1 2548 47.8
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2198.3 2539 47.7
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2186.8 2530 48.5
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2186.8 2550 47.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2179.8 2405 48.9
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2169.0 2557 47.0
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2154.0 2552 46.7
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2146.3 2550 46.7
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2140.2 2480 47.7
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2107.0 2581 46.1
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2107.0 2543 45.7
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2085.8 2568 45.7
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2079.7 2510 45.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2077.8 2559 45.5
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2075.8 2527 45.4
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2074.7 2532 45.4
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2069.3 2557 46.5
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2067.4 2532 45.7
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2063.5 2541 45.5
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2063.5 2545 45.5
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2060.4 2517 46.4
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2059.3 2517 46.2
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2036.2 2417 47.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2017.7 2553 45.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2006.9 2559 43.7
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2002.6 2551 45.0
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1989.2 2584 44.3
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1988.8 2489 45.1
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1988.0 2487 45.5
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1986.8 2495 45.1
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1984.5 2524 44.4
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 1962.6 2541 44.2
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 1956.4 2544 44.1
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1953.7 2510 44.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 1941.4 2557 43.9
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1928.7 2389 45.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1909.0 2512 43.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1904.0 2569 43.1
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 1895.9 2511 43.2
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1879.8 2481 43.4
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1874.8 2480 43.3
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1872.4 2481 43.2
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1866.3 2481 43.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1863.6 2511 42.8
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1863.6 2522 42.9
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1849.7 2526 43.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1840.1 2547 42.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1811.2 2476 42.3
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1767.3 2510 41.0
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1700.6 1942 48.5
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1627.5 2475 38.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1521.9 2437 38.9
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1512.7 1903 45.1
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1483.8 1946 44.3
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1446.4 2497 36.5
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1370.9 1855 42.0
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1293.9 1326 51.3
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1245.0 1505 46.6
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1243.4 1527 45.7
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1241.5 1341 50.1
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1236.1 1495 47.0
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1163.3 1325 46.9
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1121.7 1314 46.1
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1085.5 1069 55.4
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 3.8e-295 1019.6 2706 28.9
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 4.1e-289 999.6 1106 50.1
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.7e-275 952.6 1339 42.3
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 2.4e-273 947.2 1067 49.8
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 2.4e-273 947.2 1067 49.8
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.4e-268 931.4 1789 35.6
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.3e-255 888.3 1086 46.2
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 1.8e-244 851.3 1162 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 5.9e-195 686.8 1584 30.9
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.8e-188 665.2 487 66.1
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.5e-185 653.7 575 57.9
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 4.7e-184 650.6 1008 38.5
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.4e-180 638.3 629 53.4
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.2e-177 626.7 563 57.5
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.1e-176 625.2 1155 36.3
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 6.1e-176 623.6 536 60.8
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 5.2e-159 567.4 1685 28.5
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.9e-154 551.2 672 43.9
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.6e-152 544.7 1078 35.0
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.2e-150 539.7 741 42.6
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 3.1e-135 488.4 460 56.1
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.4e-134 485.0 458 51.1
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.9e-116 426.0 294 68.7
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.5e-110 406.4 529 46.9
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.3e-106 393.3 941 31.6
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.4e-105 387.5 625 37.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.7e-104 385.2 452 45.8
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 6.0e-99 367.9 1766 24.0
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 9.7e-97 360.5 224 75.9
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.4e-81 307.8 197 74.6
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.5e-73 283.5 230 62.2
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 2.2e-72 279.6 181 71.3
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-63 250.8 354 42.4
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.6e-62 246.9 263 52.1
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.9e-53 216.1 201 53.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 8.6e-53 214.5 114 91.2
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.0e-50 207.6 191 51.8
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.1e-47 197.6 516 32.8
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 1.3e-45 190.7 120 75.8
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 7.3e-44 184.9 121 74.4
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.5e-41 177.2 418 34.2
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 9.8e-41 174.5 610 24.3
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 8.3e-40 171.4 277 37.2
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 6.6e-29 135.2 242 37.2
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 3.3e-28 132.9 227 34.8
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.6e-27 130.6 90 72.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 3.1e-26 126.3 210 34.8
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 8.9e-26 124.8 436 26.6
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.9e-24 119.8 75 77.3
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 8.3e-24 118.2 119 59.7
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 7.1e-23 115.2 179 37.4
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-22 113.2 107 52.3
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 7.8e-22 111.7 187 35.3
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 2.3e-21 110.2 166 36.7
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.6e-21 108.6 107 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.5e-20 107.5 258 28.3
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 3.3e-20 106.3 102 56.9
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 6.2e-19 102.1 121 47.9
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 1.8e-18 100.5 139 38.8
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-15 90.9 100 51.0
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.7e-14 86.7 211 28.9
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.3e-13 84.3 98 49.0
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 5.1e-13 82.4 48 75.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 9.6e-12 78.2 152 36.2
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 3.6e-11 76.3 103 38.8
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.8e-10 73.9 426 21.8
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 5.4e-07 62.4 76 38.2


User provided reference genes

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