Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0563231 Helianthus annuus HOM05D000878 ORTHO05D003770 5.1e-60 234.2 116 100.0
HanXRQChr13g0387591 Helianthus annuus HOM05D003251 ORTHO05D003770 1.7e-23 112.8 67 79.1
ECA233G2088 Erigeron canadensis HOM05D003251 ORTHO05D003770 2.2e-10 69.3 49 61.2
ClCG07G009970 Citrullus lanatus HOM05D000878 ORTHO05D001408 3.8e-07 58.5 34 88.2
MELO3C016095.2 Cucumis melo HOM05D000878 ORTHO05D001408 3.8e-07 58.5 34 88.2
CsaV3_4G008360 Cucumis sativus L. HOM05D000878 ORTHO05D001408 3.8e-07 58.5 34 88.2
Lsat_1_v5_gn_5_127301 Lactuca sativa HOM05D000878 ORTHO05D001408 3.8e-07 58.5 40 80.0
Sed0011466 Sechium edule HOM05D000878 ORTHO05D001408 3.8e-07 58.5 34 88.2
Sed0017885 Sechium edule HOM05D000878 ORTHO05D001408 3.8e-07 58.5 34 88.2
vmacro09502 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 5.0e-07 58.2 53 60.4
MD03G1240100 Malus domestica HOM05D000878 ORTHO05D001408 6.6e-07 57.8 54 64.8
Os01g0649100 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D001408 6.6e-07 57.8 53 62.3
Zm00001eb158270 Zea mays HOM05D000878 ORTHO05D001408 6.6e-07 57.8 53 62.3
ECA234G0163 Erigeron canadensis HOM05D000878 ORTHO05D001408 8.6e-07 57.4 53 62.3
HanXRQChr10g0304821 Helianthus annuus HOM05D000878 ORTHO05D001408 8.6e-07 57.4 53 62.3
HanXRQChr12g0373491 Helianthus annuus HOM05D000878 ORTHO05D001408 8.6e-07 57.4 53 62.3
arahy.Tifrunner.gnm1.ann1.3PZ9K2 Arachis hypogaea HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
arahy.Tifrunner.gnm1.ann1.9BBP6D Arachis hypogaea HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
CANSAT35G0995 Cannabis sativa HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
CAN.G292.7 Capsicum annuum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 54 66.7
CDE10G1357 Ceratophyllum demersum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Nitab4.5_0000383g0300 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Nitab4.5_0001208g0020 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Os05g0574400 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D001408 1.1e-06 57.0 55 63.6
PGR083G1354 Punica granatum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Solyc07g062650.4 Solanum lycopersicum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Sopen07g030880 Solanum pennellii HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
PGSC0003DMG400012395 Solanum tuberosum HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
GSVIVG01021185001 Vitis vinifera HOM05D000878 ORTHO05D001408 1.1e-06 57.0 33 87.9
Actinidia35221 Actinidia chinensis HOM05D000878 ORTHO05D001408 1.5e-06 56.6 33 84.8
CDE10G0121 Ceratophyllum demersum HOM05D000878 ORTHO05D001408 1.5e-06 56.6 33 84.8
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 1.5e-06 56.6 33 84.8
FvH4_3g18670 Fragaria vesca HOM05D000878 ORTHO05D001408 1.5e-06 56.6 53 62.3
FAN11G1858 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-06 56.6 53 62.3
FAN16G1257 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-06 56.6 53 62.3
FAN21G0131 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-06 56.6 53 62.3
FAN25G1611 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-06 56.6 53 62.3
Hma1.2p1_0580F.1_g182830 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 1.5e-06 56.6 33 84.8
SGA_v2.0_scaffold130G34317 Striga asiatica HOM05D000878 ORTHO05D001408 1.5e-06 56.6 33 84.8
TAR629G1834 Trochodendron aralioides HOM05D000878 ORTHO05D001408 1.5e-06 56.6 33 84.8
BcaB07g33344 Brassica carinata HOM05D000878 ORTHO05D001408 1.9e-06 56.2 37 75.7
ECA240G4101 Erigeron canadensis HOM05D000878 ORTHO05D001408 1.9e-06 56.2 53 60.4
RcHm_v2.0_Chr5g0031491 Rosa chinensis HOM05D000878 ORTHO05D001408 1.9e-06 56.2 53 62.3
HPP92_004046 Vanilla planifolia HOM05D000878 ORTHO05D001408 1.9e-06 56.2 40 77.5
HPP92_004057 Vanilla planifolia HOM05D000878 ORTHO05D000686 1.9e-06 56.2 40 77.5
Actinidia12555 Actinidia chinensis HOM05D000878 ORTHO05D001408 2.5e-06 55.8 53 60.4
Actinidia18791 Actinidia chinensis HOM05D000878 ORTHO05D001408 2.5e-06 55.8 53 60.4
BcaB01g01549 Brassica carinata HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BcaB02g10943 Brassica carinata HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BcaB04g17101 Brassica carinata HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BcaC08g44067 Brassica carinata HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
A05p18470 Brassica napus HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
A08p01720 Brassica napus HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
C03p91280 Brassica napus HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
C06p14630 Brassica napus HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BolC3t21444H Brassica oleracea HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BolC6t36644H Brassica oleracea HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BraA05t20739Z Brassica rapa HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
BraA08t32225Z Brassica rapa HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
Carub.0001s4242 Capsella rubella HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
CARHR043460 Cardamine hirsuta HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
DCAR_021015 Daucus carota HOM05D000878 ORTHO05D001408 2.5e-06 55.8 61 55.7
Duzib235G0391 Durio zibethinus HOM05D000878 ORTHO05D001408 2.5e-06 55.8 33 84.8
Eucgr.F03251 Eucalyptus grandis HOM05D000878 ORTHO05D001408 2.5e-06 55.8 54 66.7
Thhalv10011552m.g Eutrema salsugineum HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
Peaxi162Scf01503g00019 Petunia axillaris HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 80.6
Prupe.4G058400 Prunus persica HOM05D000878 ORTHO05D001408 2.5e-06 55.8 53 60.4
Rhsim04G0024600 Rhododendron simsii HOM05D000878 ORTHO05D001408 2.5e-06 55.8 53 58.5
Sp1g39810 Schrenkiella parvula HOM05D000878 ORTHO05D001408 2.5e-06 55.8 36 77.8
ATR0602G293 Amborella trichopoda HOM05D000878 ORTHO05D001408 3.3e-06 55.5 53 62.3
Aqoxy1G03210 Aquilegia oxysepala HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
BolC6t36642H Brassica oleracea HOM05D000878 ORTHO05D001408 3.3e-06 55.5 53 58.5
DCAR_019590 Daucus carota HOM05D000878 ORTHO05D001408 3.3e-06 55.5 54 61.1
Lalb_Chr01g0006731 Lupinus albus HOM05D000878 ORTHO05D001408 3.3e-06 55.5 37 78.4
Lalb_Chr19g0133911 Lupinus albus HOM05D000878 ORTHO05D001408 3.3e-06 55.5 37 78.4
MD11G1259400 Malus domestica HOM05D000878 ORTHO05D001408 3.3e-06 55.5 54 63.0
Mapoly0134s0005 Marchantia polymorpha HOM05D000878 ORTHO05D001408 3.3e-06 55.5 37 75.7
Nn1g09065 Nelumbo nucifera HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
PSO063G4507 Papaver somniferum HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
PSO782G1666 Papaver somniferum HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
Potri.001G376500 Populus trichocarpa HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
Potri.011G096300 Populus trichocarpa HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
PRCOL_00006787 Prasinoderma coloniale HOM05D000878 ORTHO05D001408 3.3e-06 55.5 56 58.9
Prupe.4G170500 Prunus persica HOM05D000878 ORTHO05D001408 3.3e-06 55.5 54 63.0
Sabra11G0092600 Salix brachista HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
SalBow7G4777 Salvia bowleyana HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
Thecc.07G104800 Theobroma cacao HOM05D000878 ORTHO05D001408 3.3e-06 55.5 33 84.8
Zm00001eb296550 Zea mays HOM05D000878 ORTHO05D001408 3.3e-06 55.5 53 60.4
Ca_23060_v3 Cicer arietinum L. HOM05D000878 ORTHO05D001408 4.2e-06 55.1 53 60.4
Dinv14968 Davidia involucrata HOM05D000878 ORTHO05D001408 4.2e-06 55.1 53 60.4
Gorai.004G030200 Gossypium raimondii HOM05D000878 ORTHO05D001408 4.2e-06 55.1 53 62.3
Lj1A833T51 Lonicera japonica HOM05D000878 ORTHO05D001408 4.2e-06 55.1 53 60.4
Atru.chr10.1706 Acer truncatum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Atru.chr2.2245 Acer truncatum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Aa31LG10G1910 Aethionema arabicum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Aa31LG8G2230 Aethionema arabicum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Aqoxy4G00476 Aquilegia oxysepala HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
AL1G61640 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
AL3G27360 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
AT1G53240 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
MSTRG.12879 Avicennia marina HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
MSTRG.14954 Avicennia marina HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
BcaC08g43513 Brassica carinata HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
A06p01110 Brassica napus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
C06p09010 Brassica napus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
BolC6t35979H Brassica oleracea HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
BraA06t23338Z Brassica rapa HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
CAN.G162.21 Capsicum annuum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
CARHR089980 Cardamine hirsuta HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Cpa.g.sc131.66 Carica papaya HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
CiPaw.11G163200 Carya illinoinensis HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
CiPaw.12G114800 Carya illinoinensis HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Ciclev10008562m.g Citrus clementina HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Ciclev10016114m.g Citrus clementina HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Cc02_g32320 Coffea canephora HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Cc05_g11390 Coffea canephora HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Dinv04634 Davidia involucrata HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Duzib170G0254 Durio zibethinus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Migut.H01977 Erythranthe guttata HOM05D000878 ORTHO05D028390 5.5e-06 54.7 53 60.4
Eucgr.F01209 Eucalyptus grandis HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Glyma.12G159300 Glycine max HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gohir.A01G057700 Gossypium hirsutum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gohir.A04G038400 Gossypium hirsutum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gohir.D01G044100 Gossypium hirsutum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gohir.D05G344600 Gossypium hirsutum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gorai.002G063300 Gossypium raimondii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Gorai.009G372600 Gossypium raimondii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Hma1.2p1_0416F.1_g148670 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Lj8A151T52 Lonicera japonica HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Lj3g0000611 Lotus japonicus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Lj3g0017702 Lotus japonicus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Lalb_Chr03g0031071 Lupinus albus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
MBI06_g18012_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Manes.03G103200 Manihot esculenta HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Manes.15G091900 Manihot esculenta HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Nn1g04356 Nelumbo nucifera HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Nitab4.5_0000035g0050 Nicotiana tabacum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Oeu005392.1 Olea europaea HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Oeu031214.2 Olea europaea HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Potri.004G054200 Populus trichocarpa HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
PGR031G0857 Punica granatum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
QL08p026900 Quercus lobata HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Rhsim06G0205300 Rhododendron simsii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Sabra16G0247900 Salix brachista HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 81.8
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Sp3g13220 Schrenkiella parvula HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Hund02244 Selenicereus undatus HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
SEGI_02445 Sequoiadendron giganteum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Sc16g0007440 Simmondsia chinensis HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Solyc12g014180.2 Solanum lycopersicum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Sopen12g005970 Solanum pennellii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
PGSC0003DMG400015379 Solanum tuberosum HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
THA.LOC104798756 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Thecc.06G174300 Theobroma cacao HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
TWI38G1905 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
TWI39G0631 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
unitig_0.g2272 Utricularia gibba HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
unitig_749.g13534 Utricularia gibba HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
vmacro11910 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
VMungo1127G2118 Vigna mungo HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
GSVIVG01014231001 Vitis vinifera HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
Zm00001eb344340 Zea mays HOM05D000878 ORTHO05D001408 5.5e-06 54.7 33 84.8
AT3G15020 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 7.2e-06 54.3 33 84.8
THA.LOC104815567 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 7.2e-06 54.3 33 84.8
EL10Ac4g08318 Beta vulgaris HOM05D000878 ORTHO05D001408 9.5e-06 53.9 53 62.3
Peaxi162Scf00069g02021 Petunia axillaris HOM05D000878 ORTHO05D001408 9.5e-06 53.9 31 87.1
Hund02248 Selenicereus undatus HOM05D000878 ORTHO05D001408 9.5e-06 53.9 31 87.1


User provided reference genes

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