Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0562941 Helianthus annuus HOM05D004726 ORTHO05D005986 3.3e-98 361.7 178 100.0
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 1.2e-28 130.6 68 86.8
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 5.1e-27 125.2 114 56.1
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 6.7e-27 124.8 127 50.4
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 8.8e-27 124.4 127 50.4
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 9.7e-26 120.9 117 53.0
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 9.7e-26 120.9 118 50.8
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 2.2e-25 119.8 68 76.5
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 2.8e-25 119.4 68 76.5
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 2.8e-25 119.4 116 50.0
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 3.7e-25 119.0 68 77.9
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 3.7e-25 119.0 114 51.8
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 4.8e-25 118.6 114 51.8
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 8.2e-25 117.9 68 76.5
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 8.2e-25 117.9 116 50.0
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 8.2e-25 117.9 127 48.8
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 1.1e-24 117.5 68 76.5
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 1.4e-24 117.1 68 76.5
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 1.4e-24 117.1 114 50.9
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 1.4e-24 117.1 114 51.8
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 1.4e-24 117.1 68 76.5
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 1.8e-24 116.7 116 52.6
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 2.4e-24 116.3 134 48.5
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 2.4e-24 116.3 114 50.9
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 2.4e-24 116.3 114 50.9
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 2.4e-24 116.3 67 74.6
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 3.1e-24 115.9 114 50.9
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 3.1e-24 115.9 114 50.9
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 3.1e-24 115.9 68 75.0
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 3.1e-24 115.9 114 50.9
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 3.1e-24 115.9 68 75.0
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 3.1e-24 115.9 68 75.0
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 4.1e-24 115.5 68 75.0
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 4.1e-24 115.5 68 76.5
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 5.3e-24 115.2 114 50.0
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 5.3e-24 115.2 114 50.0
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 5.3e-24 115.2 116 51.7
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 5.3e-24 115.2 68 73.5
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 5.3e-24 115.2 68 75.0
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 5.3e-24 115.2 114 50.0
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 5.3e-24 115.2 157 42.0
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 9.1e-24 114.4 67 76.1
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 9.1e-24 114.4 67 76.1
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 9.1e-24 114.4 67 76.1
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 9.1e-24 114.4 117 52.1
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 9.1e-24 114.4 134 47.8
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 9.1e-24 114.4 114 49.1
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 1.2e-23 114.0 68 73.5
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 1.2e-23 114.0 114 51.8
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 1.5e-23 113.6 116 50.9
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 2.0e-23 113.2 68 75.0
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 2.0e-23 113.2 68 72.1
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 2.0e-23 113.2 114 49.1
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 2.0e-23 113.2 68 72.1
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 2.0e-23 113.2 116 50.9
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 2.0e-23 113.2 113 48.7
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 2.0e-23 113.2 116 47.4
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 2.0e-23 113.2 68 75.0
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 2.6e-23 112.8 116 48.3
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 3.4e-23 112.5 68 72.1
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 3.4e-23 112.5 116 49.1
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 4.5e-23 112.1 114 48.2
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 4.5e-23 112.1 114 48.2
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 4.5e-23 112.1 114 50.0
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 4.5e-23 112.1 114 47.4
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 5.9e-23 111.7 68 75.0
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 7.7e-23 111.3 68 73.5
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 7.7e-23 111.3 68 73.5
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 7.7e-23 111.3 67 71.6
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 1.0e-22 110.9 114 50.0
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 1.0e-22 110.9 68 67.6
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 1.0e-22 110.9 118 46.6
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 1.0e-22 110.9 68 72.1
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 1.3e-22 110.5 120 47.5
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 1.3e-22 110.5 68 70.6
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 1.3e-22 110.5 67 73.1
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 1.3e-22 110.5 68 73.5
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 1.3e-22 110.5 67 73.1
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 1.7e-22 110.2 116 47.4
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 1.7e-22 110.2 64 78.1
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 1.7e-22 110.2 114 48.2
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 1.7e-22 110.2 68 73.5
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 2.2e-22 109.8 115 48.7
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 2.2e-22 109.8 114 49.1
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 2.2e-22 109.8 68 69.1
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 2.2e-22 109.8 116 49.1
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 2.2e-22 109.8 117 47.0
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 2.2e-22 109.8 113 51.3
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 2.9e-22 109.4 68 67.6
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 2.9e-22 109.4 68 67.6
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 2.9e-22 109.4 122 47.5
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 3.8e-22 109.0 68 72.1
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 3.8e-22 109.0 68 72.1
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 3.8e-22 109.0 68 67.6
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 5.0e-22 108.6 69 73.9
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 5.0e-22 108.6 116 46.6
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 5.0e-22 108.6 114 47.4
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 6.5e-22 108.2 68 70.6
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 6.5e-22 108.2 118 45.8
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 6.5e-22 108.2 67 70.1
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 6.5e-22 108.2 68 69.1
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 6.5e-22 108.2 116 48.3
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 1.1e-21 107.5 114 46.5
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 1.9e-21 106.7 114 45.6
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 3.2e-21 105.9 118 47.5
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 3.2e-21 105.9 68 67.6
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 7.2e-21 104.8 119 44.5
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 9.4e-21 104.4 139 41.0
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 3.6e-20 102.4 67 67.2
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 2.3e-19 99.8 112 44.6
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 3.0e-19 99.4 114 42.1
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 8.8e-19 97.8 67 65.7
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 1.5e-18 97.1 114 47.4
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 2.6e-18 96.3 66 59.1
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 3.3e-18 95.9 114 42.1
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 1.3e-17 94.0 63 65.1
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 5.3e-16 88.6 60 65.0
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 1.2e-15 87.4 62 61.3
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 1.2e-15 87.4 62 61.3
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 2.0e-15 86.7 61 62.3
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 3.4e-15 85.9 58 63.8
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 4.5e-15 85.5 58 62.1
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.3e-14 84.0 119 41.2
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 1.7e-14 83.6 58 62.1
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 2.2e-14 83.2 58 62.1
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-14 82.8 58 56.9
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 2.9e-14 82.8 58 62.1
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 6.5e-14 81.6 58 60.3
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 6.3e-09 65.1 101 36.6
PRCOL_00002880 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 1.8e-08 63.5 62 48.4
unitig_37.g12422 Utricularia gibba HOM05D004726 ORTHO05D005986 1.8e-08 63.5 68 41.2
PRCOL_00003197 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 5.3e-08 62.0 57 47.4
Cre12.g520450 Chlamydomonas reinhardtii HOM05D004726 ORTHO05D005986 4.5e-07 58.9 58 50.0
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 4.5e-07 58.9 38 63.2
Zm00001eb128240 Zea mays HOM05D004726 ORTHO05D005986 1.7e-06 57.0 73 39.7


User provided reference genes

Program Settings