Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 0.0e+00 1685.6 828 100.0
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 0.0e+00 1329.3 793 82.0
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 0.0e+00 1309.7 799 80.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 0.0e+00 1175.2 816 71.4
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 0.0e+00 1144.4 768 73.6
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 0.0e+00 1078.9 833 64.7
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 5.7e-312 1073.5 868 63.1
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.4e-305 1050.8 841 62.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.5e-304 1048.1 838 63.0
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.7e-303 1045.8 841 62.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 2.4e-300 1035.4 817 63.2
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 3.1e-300 1035.0 836 62.6
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.0e-291 1005.7 796 62.4
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.6e-291 1005.4 773 65.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 2.2e-290 1002.3 789 62.2
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.1e-288 995.7 831 60.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.6e-288 994.6 813 60.0
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 9.6e-286 986.9 838 59.7
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.1e-285 985.7 827 60.7
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.2e-285 984.2 846 58.7
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 6.9e-284 980.7 851 59.3
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 5.8e-283 977.6 818 60.4
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 4.9e-282 974.5 821 59.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 6.4e-282 974.2 815 60.5
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.2e-281 971.5 807 59.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 5.5e-281 971.1 816 58.5
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.0e-280 967.6 819 59.3
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 2.6e-275 952.2 805 60.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.1e-273 946.8 830 58.1
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 7.1e-273 944.1 833 58.3
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 2.3e-271 939.1 831 58.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 5.1e-271 937.9 806 59.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.5e-270 936.4 827 58.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 6.3e-269 931.0 821 57.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 8.2e-269 930.6 823 57.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.1e-268 930.2 817 58.5
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 5.9e-267 924.5 797 57.1
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.5e-266 920.6 775 60.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.4e-265 919.8 820 57.6
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.7e-264 915.6 796 58.4
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 4.6e-264 914.8 825 57.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 6.7e-263 911.0 828 57.6
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.9e-262 909.4 831 56.0
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.7e-262 907.9 819 56.5
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.4e-262 907.5 814 56.9
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.3e-261 906.7 793 56.6
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.1e-260 901.7 758 57.5
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 6.9e-260 901.0 791 57.4
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.6e-259 899.0 810 56.5
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.6e-259 899.0 775 56.8
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.6e-259 899.0 776 58.2
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.9e-259 897.9 830 56.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.9e-258 895.6 827 55.7
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-257 893.6 831 55.1
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.5e-257 891.3 774 58.8
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.6e-256 889.8 808 55.1
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.1e-256 889.4 748 61.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 2.1e-256 889.4 811 56.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 4.7e-256 888.3 791 57.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.0e-255 887.1 811 55.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 8.8e-255 884.0 778 55.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.1e-254 883.6 840 54.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.0e-254 882.9 814 54.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.3e-254 882.1 758 58.8
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.3e-254 882.1 815 56.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.2e-253 879.4 841 56.1
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.8e-253 878.2 859 53.3
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 5.3e-252 874.8 774 57.0
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 7.0e-252 874.4 812 55.7
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-251 873.6 818 55.4
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 4.2e-249 865.1 814 54.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.6e-248 862.1 817 54.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.8e-247 859.8 815 53.6
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 3.0e-247 859.0 822 53.6
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.5e-246 856.7 831 53.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 2.6e-246 855.9 820 53.4
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-245 853.6 790 53.9
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 4.5e-243 845.1 839 53.6
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.3e-242 843.6 822 53.0
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 2.2e-242 842.8 807 53.5
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 3.8e-242 842.0 813 53.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 8.5e-242 840.9 797 54.0
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.9e-241 839.7 817 53.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 2.5e-241 839.3 784 54.7
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.4e-241 837.4 831 52.7
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.0e-239 833.9 811 54.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 4.0e-239 832.0 810 52.8
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.5e-238 830.1 784 54.0
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 4.4e-238 828.6 806 53.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 7.5e-238 827.8 801 53.6
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 8.2e-237 824.3 781 53.5
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.8e-236 823.2 744 55.9
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.1e-236 822.0 781 53.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 4.5e-235 818.5 786 52.9
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 4.5e-235 818.5 786 52.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 4.2e-233 812.0 794 51.8
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 7.2e-233 811.2 686 60.1
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 5.2e-231 805.1 791 52.0
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 8.8e-231 804.3 653 61.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.2e-230 803.9 782 52.7
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 2.6e-230 802.7 710 58.0
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 5.4e-228 795.0 808 51.2
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.2e-227 793.9 854 50.7
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-227 793.5 797 52.1
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 9.5e-225 784.3 808 50.1
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.3e-223 779.6 719 55.9
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.9e-221 771.9 727 54.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-216 757.3 658 58.1
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 2.6e-214 749.6 866 46.3
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.8e-214 747.7 674 54.2
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.9e-213 746.1 844 45.6
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.5e-209 733.8 841 45.7
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.7e-200 702.2 873 44.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 4.0e-199 699.1 679 52.7
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-192 677.6 822 44.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.8e-191 673.7 914 40.7
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.2e-188 662.9 787 43.8
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.1e-183 647.9 542 58.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.2e-180 636.3 791 41.8
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 6.6e-178 628.6 695 47.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.5e-174 615.9 599 54.3
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 6.4e-165 585.5 717 45.5
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.9e-161 573.9 700 45.9
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 3.9e-154 549.7 387 69.8
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-148 531.6 728 43.1
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 2.3e-138 497.3 533 47.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.0e-138 496.9 449 54.8
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.7e-128 463.4 345 67.0
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.6e-126 458.0 725 38.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.0e-122 443.7 343 64.1
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 8.6e-109 399.1 323 60.1
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-106 391.3 404 51.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.6e-101 372.5 626 36.9
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.1e-98 364.0 791 29.3
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 7.3e-92 342.8 877 27.7
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 6.2e-91 339.7 365 49.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 8.9e-90 335.9 403 43.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.4e-88 329.7 355 45.1
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.1e-83 312.8 458 38.4
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 6.6e-77 293.1 294 50.3
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.3e-69 268.9 515 30.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-58 232.3 291 46.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-57 229.2 201 56.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.9e-56 223.8 176 68.2
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.0e-45 189.5 181 56.4
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 7.9e-30 136.7 124 45.2
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.2e-23 114.4 142 44.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.0e-21 108.2 110 49.1
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.7e-19 102.4 87 63.2
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-16 93.2 114 39.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.8e-13 82.4 103 45.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 4.0e-13 81.3 66 50.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.0e-09 68.9 61 54.1
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.7e-09 68.6 53 50.9
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 7.7e-09 67.0 88 44.3
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.0e-08 66.6 47 66.0
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.3e-08 66.2 48 62.5
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.9e-07 62.4 57 47.4


User provided reference genes

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