Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 0.0e+00 1857.4 949 100.0
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 0.0e+00 1139.0 1019 65.4
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 7.6e-295 1017.3 1047 61.2
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.6e-207 727.2 1111 46.2
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.3e-174 617.8 1116 42.1
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 1.1e-173 614.8 1133 41.3
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.5e-173 614.4 1088 43.4
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 4.3e-173 612.8 1108 42.7
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.4e-171 607.1 1106 43.5
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.2e-170 604.7 1110 41.8
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 3.2e-168 596.7 1148 40.2
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 3.5e-167 593.2 1109 41.7
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 3.7e-164 583.2 1095 41.6
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 8.2e-164 582.0 977 43.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 3.4e-162 576.6 1110 40.0
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 4.5e-162 576.2 1119 39.5
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.0e-161 575.1 1095 41.0
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.7e-161 574.3 1068 40.4
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.7e-161 574.3 1074 40.7
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 9.4e-160 568.5 1114 39.9
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 9.4e-160 568.5 1106 39.9
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.1e-159 565.8 1124 39.0
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.1e-159 565.8 1042 41.3
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 1.4e-158 564.7 1129 38.9
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 1.8e-158 564.3 1073 40.9
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 9.7e-157 558.5 1126 38.9
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.3e-156 558.1 1099 40.3
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 8.2e-156 555.4 1079 39.1
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 8.2e-156 555.4 1106 39.8
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 8.2e-156 555.4 1125 38.7
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 8.2e-156 555.4 1124 38.6
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 1.1e-155 555.1 1103 39.9
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.6e-154 550.4 1124 37.9
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.4e-154 550.1 1124 38.0
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 8.5e-153 545.4 1114 38.8
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 3.6e-151 540.0 1093 39.3
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 2.3e-150 537.3 1072 39.2
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 5.7e-149 532.7 1081 38.6
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 5.7e-149 532.7 1124 37.7
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 1.3e-148 531.6 1053 38.5
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.3e-148 531.6 1085 40.3
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.4e-147 528.1 1073 39.2
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 1.8e-147 527.7 1114 38.4
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.0e-146 524.2 1111 38.9
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 2.6e-146 523.9 1064 39.6
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.6e-146 523.9 1073 39.0
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.9e-146 522.7 1033 39.9
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 1.3e-145 521.5 1111 38.7
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.2e-145 520.8 1111 38.5
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 1.2e-143 515.0 1081 38.5
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.1e-143 514.2 1050 38.7
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 2.7e-143 513.8 1030 40.5
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 3.6e-143 513.5 1086 39.4
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 6.1e-143 512.7 1098 39.2
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 2.3e-142 510.8 1031 38.9
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.9e-142 510.0 1110 38.1
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 6.7e-142 509.2 1111 38.1
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 1.5e-141 508.1 1227 36.1
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.0e-141 507.7 1052 38.6
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 1.7e-140 504.6 1133 37.2
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 2.8e-140 503.8 1131 37.6
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 4.8e-140 503.1 1032 38.8
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 8.2e-140 502.3 1096 38.8
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 1.8e-139 501.1 1104 37.6
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 3.1e-139 500.4 1086 37.9
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 4.1e-139 500.0 1086 37.3
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 5.3e-139 499.6 1087 37.9
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 7.0e-139 499.2 1076 38.4
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 1.3e-137 495.0 1083 37.2
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 1.5e-136 491.5 1068 38.2
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.9e-136 491.1 1057 36.6
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 1.9e-136 491.1 1082 37.5
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 4.2e-136 490.0 1080 38.0
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.2e-136 490.0 1082 37.3
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 5.5e-136 489.6 1123 36.6
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 6.1e-135 486.1 1096 37.5
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.0e-134 483.4 1048 38.1
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 5.2e-134 483.0 1095 37.6
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 5.2e-134 483.0 1013 38.8
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 6.7e-134 482.6 1037 38.0
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 8.8e-134 482.3 1038 38.8
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.5e-133 481.5 1040 38.0
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 4.4e-133 479.9 1035 38.1
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 1.3e-132 478.4 1047 37.5
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.3e-132 478.4 1083 37.2
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 1.2e-130 471.9 1084 37.7
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 1.6e-130 471.5 1061 37.6
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.5e-130 470.3 1049 37.0
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 4.2e-128 463.4 1044 36.9
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 4.2e-128 463.4 1091 36.9
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.0e-126 458.8 1104 36.4
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 1.8e-126 458.0 1099 37.3
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.3e-126 457.6 1008 37.6
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 4.0e-126 456.8 1069 37.0
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 6.8e-126 456.1 1063 37.3
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 4.8e-124 449.9 1100 36.2
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 6.3e-124 449.5 1047 36.2
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 2.7e-122 444.1 1101 36.3
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 1.5e-120 438.3 1123 36.8
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 3.3e-120 437.2 1055 36.1
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.1e-119 433.0 1037 37.3
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 1.0e-118 432.2 1025 36.0
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.0e-118 430.6 1066 35.7
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 2.6e-117 427.6 1049 35.8
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 2.2e-116 424.5 1092 35.3
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 2.4e-115 421.0 1079 36.0
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.0e-113 415.6 1027 36.6
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 1.7e-113 414.8 1048 35.8
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 5.0e-113 413.3 1058 34.7
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 4.7e-111 406.8 1024 36.0
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 6.1e-111 406.4 1062 34.8
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 3.7e-108 397.1 1029 36.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.9e-107 394.8 934 37.2
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 1.2e-106 392.1 1013 36.2
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.3e-104 384.0 1038 34.9
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 4.3e-104 383.6 1017 34.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.2e-100 371.3 1006 34.4
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 2.4e-99 367.9 1053 35.3
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 2.1e-98 364.8 1001 34.6
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 6.0e-98 363.2 1038 35.4
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 6.0e-98 363.2 1055 35.1
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 7.8e-98 362.8 1038 35.4
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 7.8e-98 362.8 1038 35.4
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 2.3e-97 361.3 1002 35.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 8.6e-97 359.4 1030 35.3
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 1.9e-96 358.2 1053 35.1
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 1.2e-95 355.5 1046 34.7
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 1.1e-94 352.4 1046 34.5
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 6.4e-92 343.2 1051 33.6
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.1e-91 342.4 1052 33.5
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 4.1e-91 340.5 526 44.9
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 6.2e-87 326.6 895 35.6
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 4.0e-86 323.9 998 33.8
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.3e-81 308.9 824 35.6
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 1.2e-77 295.8 532 42.3
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 6.4e-76 290.0 1056 31.5
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 1.9e-75 288.5 991 32.2
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 4.8e-71 273.9 1025 30.7
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 5.8e-69 266.9 475 42.1
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 3.2e-67 261.2 739 36.3
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.3e-57 229.2 533 39.4
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 3.7e-55 221.1 605 33.9
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 6.2e-55 220.3 593 32.9
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 7.6e-53 213.4 233 54.9
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 5.5e-43 180.6 516 32.2
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 7.7e-37 160.2 192 57.8
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 3.2e-35 154.8 364 34.3
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 1.5e-32 146.0 192 47.4
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 9.7e-32 143.3 265 38.1
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.8e-30 139.0 333 36.9
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 1.2e-29 136.3 467 30.2
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 5.5e-27 127.5 344 33.4
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 8.0e-26 123.6 590 27.8
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 1.4e-25 122.9 461 30.8
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 9.7e-24 116.7 940 25.9
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.8e-20 104.8 187 39.6
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-19 103.2 305 32.1
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 1.9e-19 102.4 254 36.6
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 9.4e-19 100.1 357 30.0
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 3.6e-18 98.2 292 35.3
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 4.7e-18 97.8 213 39.9
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 6.1e-18 97.4 1032 23.9
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.4e-17 96.3 334 34.1
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.8e-17 93.6 352 33.2
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.5e-16 92.8 481 29.5
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 1.8e-14 85.9 79 57.0
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 5.3e-14 84.3 169 42.6
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 7.0e-14 84.0 577 25.1
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 2.7e-13 82.0 481 29.3
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.3e-12 79.7 136 41.2
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 3.8e-12 78.2 516 28.7
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 4.2e-11 74.7 253 29.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 1.2e-10 73.2 233 33.0
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 6.1e-10 70.9 374 30.2
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 8.0e-10 70.5 262 30.2
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 1.8e-09 69.3 238 32.4
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 2.3e-09 68.9 255 30.6
SMO137G0129 Selaginella moellendorffii HOM05D024364 ORTHO05D021332 3.0e-09 68.6 718 24.9
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 1.5e-08 66.2 79 45.6
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 9.1e-06 57.0 263 31.2


User provided reference genes

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