Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.0e-223 778.9 410 100.0
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 6.2e-153 544.7 407 72.0
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.5e-138 496.9 409 66.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 6.3e-137 491.5 408 67.4
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.7e-134 483.4 405 66.4
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 7.9e-132 474.6 410 63.9
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.5e-130 470.3 409 64.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.5e-130 470.3 409 61.9
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.3e-129 467.2 410 63.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.7e-129 465.7 412 62.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.4e-128 463.8 404 62.1
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.5e-127 460.3 406 63.3
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.9e-127 458.4 409 61.6
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 5.9e-127 458.4 409 61.6
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.9e-125 453.4 409 61.4
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.2e-125 452.6 408 62.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.2e-125 452.2 405 62.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.2e-125 452.2 409 62.3
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.7e-124 449.5 409 61.4
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.8e-123 446.8 399 62.7
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.3e-123 446.4 415 59.8
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.0e-123 446.0 404 61.6
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.9e-123 445.7 409 60.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 3.9e-123 445.7 413 60.8
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.5e-122 443.7 406 61.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 2.0e-122 443.4 410 60.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.2e-121 439.9 415 59.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.8e-121 439.5 408 59.8
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.8e-121 439.5 406 61.1
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.8e-121 439.5 406 60.8
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.8e-121 438.7 406 60.3
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 1.4e-120 437.2 416 58.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.0e-120 434.9 413 59.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.0e-120 434.9 415 58.6
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 7.0e-120 434.9 407 59.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.2e-119 434.1 404 58.9
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.5e-119 432.6 391 61.1
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 7.7e-119 431.4 405 58.8
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-118 430.3 424 58.3
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.1e-117 427.6 387 59.9
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 7.2e-117 424.9 410 58.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.7e-116 422.9 437 55.8
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 3.6e-116 422.5 412 59.5
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.3e-115 419.9 398 58.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 4.0e-115 419.1 407 55.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 4.0e-115 419.1 410 57.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 5.2e-115 418.7 407 57.7
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-114 417.5 407 57.7
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.6e-114 416.4 456 54.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 5.7e-114 415.2 407 58.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 9.8e-114 414.5 410 56.6
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.7e-113 412.5 413 56.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 6.3e-113 411.8 415 56.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 8.3e-113 411.4 408 57.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.4e-112 409.8 382 58.6
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 5.4e-112 408.7 416 56.5
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.0e-112 408.3 386 58.3
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 7.0e-112 408.3 415 56.4
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.1e-112 407.9 386 58.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.6e-111 407.1 414 56.3
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.6e-111 407.1 399 57.4
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 4.5e-111 405.6 429 55.9
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.5e-110 401.7 390 59.2
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 6.5e-110 401.7 383 58.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.2e-109 399.4 390 59.0
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 9.4e-109 397.9 378 60.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.1e-108 396.7 322 66.1
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 2.1e-108 396.7 409 55.0
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.7e-108 396.4 358 60.6
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.1e-108 395.2 396 56.8
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 8.0e-108 394.8 409 55.0
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-107 394.0 391 59.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.4e-106 389.4 415 53.7
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.3e-105 387.5 424 55.4
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.8e-105 386.3 409 54.0
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.4e-104 384.0 510 47.1
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.8e-104 383.6 405 54.3
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 9.1e-104 381.3 353 60.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.0e-103 380.2 384 58.9
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.3e-102 377.5 407 53.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.3e-102 377.5 361 57.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.3e-102 377.5 413 52.5
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.3e-102 377.5 408 53.2
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.3e-101 372.9 500 47.2
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.2e-100 370.9 401 54.1
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 8.0e-100 368.2 382 57.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 6.8e-99 365.2 395 53.2
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.9e-99 364.8 374 57.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.7e-95 353.2 409 51.6
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.1e-93 347.8 400 50.2
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.9e-93 347.1 409 50.9
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 7.3e-93 345.1 400 51.0
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 7.3e-93 345.1 407 50.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 7.3e-93 345.1 393 50.6
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 9.5e-93 344.7 399 50.9
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 6.2e-92 342.0 400 50.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.4e-91 340.9 402 50.0
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.6e-90 336.7 400 49.8
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.2e-89 333.6 439 46.5
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 9.2e-88 328.2 399 48.6
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 9.2e-88 328.2 411 49.4
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 7.8e-87 325.1 400 49.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.1e-85 321.2 406 48.5
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.8e-84 316.6 331 58.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.1e-83 314.7 417 45.8
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-78 297.4 292 58.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-76 291.2 377 50.1
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 3.7e-73 279.6 402 46.0
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 2.1e-71 273.9 365 47.4
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.8e-67 260.8 341 49.3
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 3.2e-64 250.0 321 47.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 9.3e-64 248.4 345 46.7
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 5.6e-61 239.2 240 55.8
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.3e-60 238.0 259 56.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 2.1e-60 237.3 344 46.2
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.4e-59 234.6 320 47.2
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 2.0e-58 230.7 442 37.6
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 7.9e-47 192.2 218 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 4.3e-45 186.4 321 40.8
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.6e-34 150.6 152 55.9
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.6e-34 150.6 152 55.9
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-33 148.7 98 90.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.6e-31 139.8 138 56.5
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.3e-30 138.3 353 30.6
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.5e-24 117.5 289 31.5
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 2.3e-22 110.9 142 45.1
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.1e-22 109.8 166 42.2
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.3e-20 102.8 174 42.0
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 5.9e-18 96.3 129 42.6
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.2e-17 94.4 70 75.7
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-14 85.1 65 70.8
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.1e-13 82.0 177 36.7
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 3.7e-12 77.0 39 76.9
HanXRQChr04g0115431 Helianthus annuus HOM05D005133 ORTHO05D006685 5.9e-10 69.7 40 77.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.5e-08 64.3 101 37.6
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.8e-06 58.2 42 71.4
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 2.3e-06 57.8 71 49.3
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 3.0e-06 57.4 121 35.5


User provided reference genes

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