Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 3.6e-216 755.0 479 100.0
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.2e-126 457.6 481 70.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 9.7e-105 384.8 473 57.1
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.3e-101 374.4 520 51.3
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.3e-74 283.9 495 48.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 7.5e-73 278.9 461 47.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.7e-70 270.4 411 45.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.2e-69 267.3 450 47.1
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 5.5e-68 262.7 490 46.3
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.0e-66 258.5 446 46.2
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.3e-66 257.3 412 44.4
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.6e-65 253.8 464 42.2
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 9.2e-63 245.4 448 46.2
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.3e-61 241.5 497 45.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 6.6e-61 239.2 459 45.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 8.6e-61 238.8 441 45.6
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.6e-60 236.1 446 43.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.7e-59 233.0 446 41.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.4e-58 231.5 405 42.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 5.2e-58 229.6 422 47.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.8e-58 229.2 453 43.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 9.8e-57 225.3 408 41.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.2e-56 224.2 408 40.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.2e-56 224.2 408 40.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.2e-56 224.2 408 41.9
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.9e-56 223.0 448 44.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.4e-55 220.7 412 42.7
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.6e-54 218.0 444 41.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.6e-54 216.5 463 39.3
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 7.8e-54 215.7 456 39.3
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.0e-53 215.3 409 41.6
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.0e-53 215.3 409 41.6
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.0e-53 215.3 434 45.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 8.6e-53 212.2 396 41.2
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.9e-52 211.1 453 41.7
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.3e-52 210.3 494 45.1
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.6e-52 209.5 438 42.5
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.8e-51 207.2 419 39.6
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.6e-51 206.8 429 40.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 8.0e-51 205.7 442 42.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.0e-50 205.3 469 40.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-50 204.1 410 40.2
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-50 203.8 409 40.3
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.1e-50 203.8 466 38.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.9e-50 202.2 432 38.7
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.0e-49 201.1 461 38.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.0e-49 201.1 417 39.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.2e-48 197.6 440 39.8
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 2.9e-48 197.2 481 39.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.9e-48 197.2 438 37.4
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.7e-48 196.8 457 39.2
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.1e-47 195.3 486 35.4
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-47 194.9 390 41.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.4e-47 194.1 468 42.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 3.5e-46 190.3 481 39.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.5e-46 190.3 467 38.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 7.8e-46 189.1 482 38.0
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-45 188.3 438 41.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.6e-45 185.7 439 38.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.9e-44 184.5 445 40.9
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.5e-44 184.1 488 35.9
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.3e-44 182.6 414 41.8
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-43 181.8 400 38.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-42 178.7 417 36.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-42 178.7 417 36.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.4e-42 178.3 400 39.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.0e-42 176.8 466 37.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 6.8e-42 176.0 458 36.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 8.9e-42 175.6 524 33.8
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.2e-41 175.3 512 34.6
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.5e-41 172.6 375 44.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.5e-41 172.6 445 41.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 6.4e-40 169.5 529 36.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 8.3e-40 169.1 465 35.9
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.9e-39 167.9 408 36.8
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.4e-39 167.5 471 34.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.1e-39 166.0 381 39.1
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 9.2e-39 165.6 512 32.8
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.2e-38 165.2 369 40.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.6e-38 164.9 575 34.6
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 2.1e-38 164.5 498 36.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.6e-38 163.3 483 35.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 6.0e-38 162.9 513 34.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 6.0e-38 162.9 451 35.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.3e-37 161.8 575 34.1
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 3.9e-37 160.2 551 35.0
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 8.6e-37 159.1 475 34.3
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-36 158.7 379 38.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.9e-36 157.9 481 41.2
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.5e-36 157.5 487 33.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.3e-36 157.1 512 39.5
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.3e-36 157.1 439 37.6
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.6e-36 156.4 348 42.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 9.5e-36 155.6 539 34.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.6e-35 154.8 409 41.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.1e-35 154.5 517 32.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.1e-35 154.5 541 34.0
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 8.1e-35 152.5 443 33.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-34 151.8 489 40.3
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.3e-34 151.0 478 32.4
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.1e-34 150.6 446 33.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.0e-34 150.2 466 33.7
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-33 148.3 335 38.5
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.5e-33 148.3 475 37.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.6e-33 147.5 484 33.5
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.4e-33 146.7 511 34.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 4.4e-33 146.7 475 32.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.4e-33 146.7 473 32.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.2e-32 144.4 532 34.0
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.2e-32 144.4 444 33.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.8e-32 143.7 434 31.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.4e-32 142.5 537 28.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.2e-31 139.0 495 30.7
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 6.0e-30 136.3 448 33.0
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.7e-29 134.8 517 33.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.5e-28 131.7 430 32.6
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.5e-28 131.0 469 36.0
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.3e-28 130.2 233 45.5
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.1e-27 127.9 502 36.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.8e-27 127.5 490 31.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.8e-27 127.5 478 35.6
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 8.1e-27 125.9 517 33.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.8e-26 124.8 518 34.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.1e-26 124.0 497 28.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 4.0e-26 123.6 470 37.0
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.9e-26 122.5 189 50.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.2e-25 122.1 548 30.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.5e-25 121.7 507 36.5
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.6e-25 120.9 434 32.5
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 5.8e-25 119.8 405 32.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.2e-23 113.6 476 34.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 4.6e-22 110.2 418 34.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.6e-21 106.3 474 32.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.1e-20 105.5 185 45.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.3e-20 104.0 396 29.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.8e-19 100.1 174 44.3
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.1e-18 99.0 193 40.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.4e-18 98.6 175 40.6
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.8e-18 98.2 472 31.8
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-17 95.5 191 39.3
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.0e-17 94.7 531 31.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.6e-17 94.4 180 38.3
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 7.6e-17 92.8 449 29.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.8e-16 90.5 205 38.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.9e-16 90.1 169 41.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.4e-16 89.4 186 40.9
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.4e-15 88.6 485 29.3
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.6e-14 85.1 197 39.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.6e-14 85.1 150 54.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.7e-14 84.3 184 33.7
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.5e-14 84.0 349 32.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.3e-13 82.0 84 59.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.9e-13 80.5 399 28.1
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.1e-13 80.1 414 30.9
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.5e-12 77.8 413 29.1
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.6e-12 75.9 514 25.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 9.6e-12 75.9 196 34.7
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.1e-10 72.4 107 43.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.4e-09 67.4 409 28.1
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 5.8e-09 66.6 186 32.8
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 9.9e-09 65.9 201 31.3
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.2e-08 64.7 140 39.3
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.2e-08 64.7 146 34.9
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.9e-08 64.3 212 33.5
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.9e-08 64.3 504 25.2
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 4.9e-08 63.5 317 29.0
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 4.9e-08 63.5 159 31.4
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.4e-08 63.2 83 48.2
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.2e-07 60.8 83 47.0


User provided reference genes

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