Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 0.0e+00 1189.5 588 100.0
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 4.3e-272 941.0 589 78.1
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-270 936.4 588 78.4
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 2.9e-252 875.2 591 74.6
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.3e-223 780.0 594 65.7
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.5e-221 771.9 597 65.8
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.3e-220 770.0 592 65.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.9e-220 768.8 595 64.4
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.3e-217 759.2 594 63.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 6.5e-212 741.1 589 61.6
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 4.2e-211 738.4 598 61.0
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 2.7e-210 735.7 601 62.4
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.6e-210 735.3 594 61.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 8.0e-210 734.2 596 62.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.8e-209 733.0 594 61.4
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.0e-208 729.6 670 56.9
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.6e-208 729.2 666 55.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 4.4e-208 728.4 599 61.8
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 5.7e-208 728.0 596 62.4
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.8e-207 725.7 597 60.6
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 4.8e-207 724.9 592 61.8
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.1e-206 723.8 591 60.9
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.3e-206 721.5 595 61.2
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 7.0e-206 721.1 600 61.3
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.2e-205 720.3 593 60.7
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.0e-205 719.5 593 61.0
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.5e-205 718.4 597 60.0
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.9e-205 718.0 596 60.9
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-204 716.8 590 59.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 2.2e-204 716.1 595 61.2
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.9e-204 715.7 597 59.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 3.8e-204 715.3 608 59.0
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 8.5e-204 714.1 597 60.3
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.5e-203 713.4 594 60.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 3.6e-202 708.8 596 59.2
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.8e-201 706.4 596 59.7
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 2.6e-200 702.6 597 58.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.4e-200 702.2 592 58.6
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 3.4e-200 702.2 628 57.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 4.4e-200 701.8 595 59.0
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 7.5e-200 701.0 595 60.3
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.7e-199 698.7 595 58.7
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 4.8e-199 698.4 591 59.2
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 8.3e-199 697.6 589 58.6
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.4e-198 694.9 591 58.9
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.2e-197 693.7 594 59.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.6e-197 693.3 591 58.7
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.7e-197 692.6 589 58.6
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 3.5e-197 692.2 590 59.7
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 3.5e-197 692.2 593 59.0
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.3e-196 689.5 593 58.0
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.3e-196 689.5 596 57.7
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 3.8e-196 688.7 623 57.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 8.6e-196 687.6 592 57.8
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.3e-195 685.6 593 57.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.2e-194 683.7 594 58.8
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.1e-194 682.9 591 57.9
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 2.8e-194 682.6 600 56.3
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.8e-194 682.6 630 55.7
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.4e-193 680.2 591 57.9
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 3.0e-193 679.1 595 56.5
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.9e-193 677.6 596 57.9
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 5.7e-192 674.9 609 57.3
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 7.5e-192 674.5 588 58.2
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 9.8e-192 674.1 594 58.2
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.8e-191 672.5 593 57.8
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 4.9e-191 671.8 617 55.3
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 8.3e-191 671.0 605 55.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.4e-190 670.2 594 56.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.8e-190 669.8 602 56.1
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.4e-190 669.5 595 56.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 5.4e-190 668.3 595 56.3
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.6e-189 666.8 604 55.5
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-188 663.7 600 55.8
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.9e-187 659.8 598 55.7
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 6.1e-186 654.8 596 57.4
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.4e-185 653.7 530 62.1
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 8.9e-185 651.0 597 56.1
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.9e-185 651.0 594 56.7
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 5.8e-184 648.3 592 56.1
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 7.5e-184 647.9 599 56.1
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.3e-183 647.1 593 56.3
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.4e-182 643.7 597 55.9
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.4e-182 643.7 597 55.9
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 7.0e-182 641.3 592 55.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 7.0e-182 641.3 592 56.4
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 9.2e-182 641.0 597 55.8
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.6e-181 640.2 599 54.8
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.0e-180 637.5 596 56.2
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.0e-180 637.5 555 57.8
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 3.0e-180 636.0 595 53.8
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 7.0e-174 614.8 559 55.6
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.0e-173 611.7 574 55.1
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 6.0e-173 611.7 594 54.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.8e-173 611.3 594 53.9
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.7e-172 610.1 592 52.4
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.4e-168 595.9 550 55.3
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 7.5e-168 594.7 505 60.0
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 3.2e-166 589.3 599 50.8
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 4.3e-163 578.9 606 49.5
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.4e-160 569.3 600 51.0
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.3e-156 557.4 616 48.4
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 4.2e-150 535.8 592 48.5
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.7e-149 533.1 418 64.8
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.6e-146 523.9 525 52.6
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 4.8e-146 522.3 524 53.1
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 6.2e-146 521.9 439 60.8
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 3.1e-145 519.6 597 45.7
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-144 514.6 519 52.4
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.6e-141 505.8 467 57.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 7.9e-133 478.4 548 48.9
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 6.7e-124 448.7 606 40.9
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.8e-121 440.7 395 55.4
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.2e-118 429.9 574 43.2
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.6e-112 410.2 596 40.8
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.2e-110 402.1 280 71.1
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 2.7e-109 400.2 609 37.9
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.9e-102 377.5 591 39.4
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 3.1e-97 360.1 413 49.6
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 2.3e-92 344.0 249 67.1
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-89 334.7 286 60.5
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.1e-89 333.6 628 34.9
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.9e-86 324.3 304 52.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.1e-73 282.0 605 31.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.7e-71 274.6 464 38.6
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.0e-68 265.4 250 56.8
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 4.4e-67 260.0 130 90.8
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.4e-66 256.1 401 40.1
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 5.4e-57 226.5 279 47.0
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 2.4e-49 201.1 167 58.7
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 3.2e-49 200.7 131 67.2
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 9.6e-46 189.1 599 29.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 3.4e-43 180.6 94 89.4
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 6.6e-39 166.4 281 36.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.7e-34 151.8 128 57.0
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 4.9e-34 150.2 134 53.0
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 3.3e-30 137.5 383 29.5
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 7.4e-30 136.3 116 56.0
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.2e-26 124.8 131 46.6
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.2e-25 120.6 187 38.0
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.9e-23 114.0 900 21.7
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-22 112.5 55 92.7
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 2.4e-20 104.8 79 57.0
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.9e-18 97.1 84 57.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 3.9e-15 87.4 106 44.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.7e-14 83.6 88 47.7
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 6.5e-10 70.1 105 39.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.9e-09 68.6 41 75.6
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.9e-09 68.6 41 75.6
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.5e-09 68.2 39 79.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 4.2e-09 67.4 39 79.5
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 5.5e-09 67.0 53 64.2
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 5.5e-09 67.0 53 64.2
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 5.5e-09 67.0 57 56.1


User provided reference genes

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