Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 1.7e-64 249.2 127 100.0
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 3.0e-29 132.1 72 91.7
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.9e-28 129.4 127 61.4
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.6e-25 119.0 130 59.2
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-16 89.7 99 49.5
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-16 89.7 99 49.5
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.8e-16 88.6 96 53.1
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.5e-16 87.4 79 57.0
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.1e-15 87.0 136 40.4
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.1e-15 87.0 99 48.5
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.2e-15 85.1 142 40.8
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.2e-15 85.1 142 40.8
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-14 83.6 142 40.1
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 2.1e-14 82.8 97 48.5
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 4.6e-14 81.6 93 49.5
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.6e-14 81.6 142 40.1
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 6.1e-14 81.3 108 44.4
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 6.1e-14 81.3 94 53.2
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.0e-13 80.5 104 46.2
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.0e-13 80.5 78 55.1
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-13 80.1 142 39.4
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.3e-13 79.3 99 47.5
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.3e-13 79.3 106 48.1
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 3.0e-13 79.0 77 57.1
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 3.0e-13 79.0 72 56.9
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.9e-13 78.6 115 44.3
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.1e-13 78.2 129 41.1
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 6.7e-13 77.8 108 43.5
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 6.7e-13 77.8 103 45.6
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 8.8e-13 77.4 99 43.4
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 8.8e-13 77.4 97 45.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 8.8e-13 77.4 67 55.2
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.1e-12 77.0 81 51.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.1e-12 77.0 98 46.9
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.5e-12 76.6 85 49.4
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.5e-12 76.6 100 44.0
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.9e-12 76.3 99 41.4
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.9e-12 76.3 99 47.5
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-12 76.3 77 58.4
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-12 75.9 100 46.0
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.5e-12 75.9 139 40.3
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 3.3e-12 75.5 142 36.6
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 4.3e-12 75.1 67 56.7
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.3e-12 75.1 77 57.1
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.7e-12 74.7 79 50.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 5.7e-12 74.7 92 45.7
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.4e-12 74.3 98 41.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.4e-12 74.3 63 57.1
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 7.4e-12 74.3 97 44.3
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 9.7e-12 73.9 85 47.1
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.7e-12 73.9 77 55.8
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.7e-11 73.2 99 40.4
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-11 73.2 97 44.3
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.7e-11 73.2 130 38.5
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.7e-11 73.2 106 48.1
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 2.2e-11 72.8 67 52.2
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.2e-11 72.8 149 35.6
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.2e-11 72.8 99 43.4
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.8e-11 72.4 77 49.4
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.8e-11 72.4 78 52.6
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 4.8e-11 71.6 76 50.0
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 4.8e-11 71.6 68 52.9
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 4.8e-11 71.6 123 42.3
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 6.3e-11 71.2 105 40.0
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 6.3e-11 71.2 67 50.7
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 6.3e-11 71.2 60 56.7
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 6.3e-11 71.2 99 42.4
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 8.2e-11 70.9 90 45.6
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 8.2e-11 70.9 96 44.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 8.2e-11 70.9 100 42.0
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.1e-10 70.5 73 52.1
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.1e-10 70.5 108 43.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.1e-10 70.5 109 35.8
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.4e-10 70.1 85 44.7
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.4e-10 70.1 71 50.7
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.4e-10 70.1 67 52.2
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.8e-10 69.7 59 57.6
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-10 69.7 59 55.9
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.8e-10 69.7 59 55.9
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.8e-10 69.7 69 53.6
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-10 69.3 100 43.0
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.4e-10 69.3 98 43.9
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.1e-10 68.9 150 36.7
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.1e-10 68.9 77 50.6
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.1e-10 68.9 91 47.3
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 3.1e-10 68.9 65 50.8
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.1e-10 68.6 115 40.9
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 5.3e-10 68.2 85 44.7
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 5.3e-10 68.2 97 42.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.3e-10 68.2 98 36.7
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 6.9e-10 67.8 84 46.4
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 6.9e-10 67.8 93 45.2
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.9e-10 67.8 97 39.2
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 9.1e-10 67.4 112 40.2
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.1e-10 67.4 71 50.7
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 9.1e-10 67.4 88 44.3
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 9.1e-10 67.4 65 50.8
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.2e-09 67.0 54 57.4
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-09 67.0 59 52.5
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.5e-09 66.6 98 43.9
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.5e-09 66.6 68 51.5
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.5e-09 66.6 84 42.9
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.5e-09 66.6 102 38.2
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.5e-09 66.6 150 35.3
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.5e-09 66.6 124 36.3
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.5e-09 66.6 97 43.3
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.5e-09 66.6 82 47.6
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 1.5e-09 66.6 65 47.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.0e-09 66.2 67 46.3
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.0e-09 66.2 59 54.2
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.0e-09 66.2 125 40.0
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 3.4e-09 65.5 100 41.0
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.4e-09 65.5 115 38.3
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.4e-09 65.5 112 39.3
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 4.5e-09 65.1 77 48.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 5.9e-09 64.7 117 36.8
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.7e-09 64.3 71 46.5
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 7.7e-09 64.3 89 42.7
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.0e-08 63.9 91 38.5
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-08 63.9 106 41.5
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.3e-08 63.5 91 38.5
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 1.3e-08 63.5 118 36.4
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.3e-08 63.5 54 55.6
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.3e-08 63.5 98 36.7
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.3e-08 63.5 115 37.4
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.7e-08 63.2 99 40.4
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-08 63.2 107 38.3
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-08 63.2 89 42.7
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.7e-08 63.2 59 52.5
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 2.2e-08 62.8 99 40.4
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-08 62.8 66 51.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-08 62.8 107 38.3
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.9e-08 62.4 147 33.3
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.9e-08 62.4 98 40.8
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 2.9e-08 62.4 92 45.7
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 3.8e-08 62.0 67 44.8
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 3.8e-08 62.0 147 33.3
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 3.8e-08 62.0 73 43.8
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 5.0e-08 61.6 100 38.0
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 5.0e-08 61.6 68 50.0
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 6.5e-08 61.2 93 39.8
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 6.5e-08 61.2 103 35.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 6.5e-08 61.2 103 35.0
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 8.5e-08 60.8 98 38.8
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 8.5e-08 60.8 117 34.2
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-07 60.5 95 37.9
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.1e-07 60.5 105 37.1
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 1.4e-07 60.1 120 35.8
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.4e-07 60.1 113 34.5
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 1.4e-07 60.1 49 57.1
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.4e-07 60.1 87 40.2
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.4e-07 60.1 87 40.2
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.9e-07 59.7 89 38.2
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.2e-07 58.9 95 42.1
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 3.2e-07 58.9 103 38.8
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 3.2e-07 58.9 102 40.2
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 4.2e-07 58.5 122 35.2
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.5e-07 58.2 74 47.3
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 5.5e-07 58.2 87 41.4
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 7.2e-07 57.8 97 38.1
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 9.4e-07 57.4 110 32.7
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 9.4e-07 57.4 117 39.3
Eucgr.B00828 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.2e-06 57.0 122 36.9
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.6e-06 56.6 97 35.1
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 2.1e-06 56.2 73 42.5
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 2.1e-06 56.2 100 40.0
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 2.1e-06 56.2 102 39.2
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 2.7e-06 55.8 93 37.6
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 2.7e-06 55.8 74 41.9
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 2.7e-06 55.8 77 39.0
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 4.7e-06 55.1 100 39.0
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 4.7e-06 55.1 101 38.6
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 6.1e-06 54.7 74 43.2
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 6.1e-06 54.7 68 41.2
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 7.9e-06 54.3 112 37.5


User provided reference genes

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