Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1513.4 754 100.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1314.7 763 84.9
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1296.6 761 84.8
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1253.4 760 80.7
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1225.3 768 79.6
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1214.1 773 77.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1207.6 770 76.1
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1203.0 770 75.7
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1193.3 770 75.1
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1191.8 770 75.7
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1190.6 774 74.9
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 807 72.5
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1184.5 772 74.6
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 751 76.6
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1182.9 773 74.4
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 768 75.5
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 754 78.0
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1180.2 811 71.4
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 769 74.9
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 768 75.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1176.4 772 74.4
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1176.4 768 75.0
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 811 72.0
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1175.2 765 74.1
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 772 74.7
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1171.8 767 74.7
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1171.4 736 78.1
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1170.2 766 74.4
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1169.8 769 74.4
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 770 73.5
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1168.7 768 74.6
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1168.3 767 74.4
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1167.1 766 73.5
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 769 74.5
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1162.1 768 74.2
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1156.7 768 72.9
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1151.3 774 73.0
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 770 71.3
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1137.9 765 72.2
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 781 71.4
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 774 71.8
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 778 72.5
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1132.9 772 71.2
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1132.9 754 73.5
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 774 71.3
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 765 71.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 765 72.7
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 774 71.2
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1129.0 774 71.3
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1127.5 756 74.2
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 764 72.9
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 768 72.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 774 71.7
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1123.6 770 70.8
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 772 71.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1122.1 765 72.4
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1121.3 765 71.2
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1120.9 770 70.8
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 773 71.5
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 768 71.1
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1119.0 767 70.8
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1118.6 749 73.7
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1118.2 765 72.3
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1115.9 755 73.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1115.5 772 70.3
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 772 70.2
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 775 70.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1112.8 772 69.9
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1110.9 763 71.6
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1110.1 757 72.8
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1098.6 772 69.4
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1098.2 757 70.7
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1096.6 774 71.1
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1094.7 763 71.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1092.8 882 63.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 761 71.2
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1088.6 767 69.5
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1084.3 766 68.8
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1080.1 769 67.9
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 777 69.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 1.0e-311 1072.8 775 68.0
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.8e-307 1058.9 773 67.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.3e-305 1052.7 775 67.0
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 8.4e-305 1050.0 778 67.0
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.4e-304 1049.3 777 66.5
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 9.3e-304 1046.6 676 74.9
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.2e-303 1046.2 766 66.7
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.8e-300 1035.0 769 67.9
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 4.2e-296 1021.1 759 67.9
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 6.7e-294 1013.8 734 69.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 4.8e-292 1007.7 784 64.5
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 8.2e-292 1006.9 692 71.1
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 7.6e-290 1000.3 767 64.9
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.2e-287 993.0 690 71.2
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 3.6e-287 991.5 761 67.4
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.9e-285 985.7 663 73.6
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 4.5e-282 974.5 747 64.3
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.7e-279 965.3 757 63.5
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 8.8e-278 960.3 737 65.8
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.3e-276 956.4 752 62.0
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 4.8e-276 954.5 727 64.0
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.5e-274 949.5 734 66.6
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.9e-264 916.0 735 65.0
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-262 909.4 631 71.9
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.2e-260 902.5 658 69.0
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.1e-255 884.4 638 69.7
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-253 879.4 653 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 4.1e-251 871.7 684 62.6
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.4e-235 820.1 564 71.5
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.5e-232 810.1 588 70.4
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 9.5e-224 780.8 733 57.0
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 1.7e-212 743.4 509 71.3
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.7e-196 690.3 438 77.4
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.0e-173 613.6 437 69.1
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 2.6e-149 533.5 373 72.7
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 8.3e-143 511.9 585 49.4
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 3.1e-142 510.0 338 70.1
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 6.1e-122 442.6 273 78.8
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.8e-114 417.2 346 58.1
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-111 408.3 266 75.9
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 7.8e-93 345.9 248 67.3
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.4e-78 298.5 213 73.7
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.3e-76 292.0 266 59.0
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 4.3e-75 287.0 356 46.1
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 4.8e-74 283.5 260 61.5
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-69 267.7 184 70.1
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.3e-68 265.4 252 57.9
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 2.4e-65 254.6 225 55.6
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.5e-62 244.6 153 75.8
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.7e-60 236.1 137 80.3
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-57 227.6 137 77.4
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 5.5e-46 190.3 148 64.9
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.4e-44 185.7 150 63.3
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-44 185.3 105 82.9
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-43 182.6 264 41.7
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.0e-43 181.8 105 79.0
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.6e-43 181.4 105 81.0
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 1.7e-42 178.7 118 72.9
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.8e-42 177.9 104 77.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.1e-41 174.5 108 73.1
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.7e-37 160.6 97 76.3
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.4e-36 159.1 120 64.2
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.6e-35 154.8 86 81.4
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-32 146.0 85 77.6
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 3.5e-32 144.4 95 69.5
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.3e-31 142.5 94 76.6
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.5e-30 139.0 79 79.7
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.6e-29 134.4 153 51.6
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.7e-29 134.0 89 73.0
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.7e-29 134.0 89 73.0
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-28 132.9 89 71.9
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-28 132.5 83 75.9
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.0e-28 131.3 104 67.3
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.0e-27 128.6 79 73.4
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-22 112.5 72 72.2
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.5e-22 112.5 164 39.0
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.0e-20 104.4 219 32.9
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.4e-19 100.9 74 66.2
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.8e-18 98.2 219 32.0
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 4.5e-16 90.9 59 78.0
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 5.0e-15 87.4 100 52.0
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-11 76.3 51 70.6
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 4.9e-10 70.9 44 79.5
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 6.4e-10 70.5 45 68.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 8.3e-10 70.1 175 32.0
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.7e-07 62.4 37 64.9
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.3e-07 62.0 44 59.1


User provided reference genes

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