Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-148 529.6 266 100.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-128 462.6 324 78.1
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-128 462.6 324 78.1
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-128 462.6 324 78.1
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-128 462.6 324 78.1
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-116 423.7 324 73.1
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.0e-103 380.6 323 65.6
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.5e-102 376.7 321 64.5
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 2.3e-100 369.4 324 66.7
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 2.9e-98 362.5 321 62.3
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 6.4e-98 361.3 269 74.7
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 4.6e-96 355.1 322 63.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.8e-96 354.4 320 61.6
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.8e-96 354.4 320 61.6
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-94 350.5 325 61.8
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-94 350.5 325 61.8
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-94 350.5 325 61.8
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-94 350.5 325 61.8
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 2.5e-94 349.4 321 60.7
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.2e-93 347.1 322 59.6
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.2e-93 347.1 322 59.6
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-93 346.7 325 61.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.6e-91 339.3 322 59.3
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 4.4e-91 338.6 322 57.8
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-91 338.2 258 67.4
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 7.5e-91 337.8 326 58.3
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 7.5e-91 337.8 320 59.7
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 7.5e-91 337.8 320 59.7
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 9.8e-91 337.4 326 58.3
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 9.8e-91 337.4 326 58.3
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-90 335.1 324 58.0
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 8.3e-90 334.3 326 57.7
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-89 334.0 306 64.1
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 5.0e-87 325.1 307 58.6
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 4.3e-86 322.0 264 64.0
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.8e-84 316.6 335 57.0
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 6.8e-84 314.7 306 58.2
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.7e-82 308.9 324 54.6
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.1e-81 307.4 243 67.5
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 2.7e-80 302.8 300 55.7
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 8.9e-76 287.7 302 55.3
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 9.9e-75 284.3 243 61.3
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-74 283.9 281 58.0
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 6.4e-74 281.6 247 60.3
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 8.4e-74 281.2 273 59.7
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 1.7e-71 273.5 296 53.0
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.5e-64 249.2 243 57.2
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.5e-62 243.0 240 54.2
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.5e-62 243.0 240 54.2
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.5e-62 243.0 240 54.2
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.5e-62 243.0 240 54.2
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.5e-62 243.0 240 54.2
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.1e-61 240.0 188 67.6
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 2.8e-61 239.6 149 77.9
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 8.1e-61 238.0 228 60.5
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 3.8e-58 229.2 184 65.8
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 1.8e-55 220.3 174 67.2
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 1.8e-55 220.3 174 67.2
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 6.7e-55 218.4 149 81.9
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 3.3e-54 216.1 239 51.5
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.0e-52 209.1 207 56.0
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 4.9e-50 202.2 198 59.1
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 6.0e-48 195.3 130 70.8
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-47 194.1 106 83.0
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.6e-46 188.0 112 77.7
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.4e-44 184.1 137 64.2
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.4e-44 183.3 103 81.6
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.0e-44 182.6 103 80.6
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 1.2e-43 181.0 186 55.9
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.0e-43 180.3 235 47.2
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.0e-43 180.3 279 38.7
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 5.8e-43 178.7 169 60.4
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.3e-42 177.6 91 87.9
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.3e-42 177.6 91 87.9
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.2e-41 172.6 123 70.7
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.3e-39 167.5 197 54.8
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-39 166.0 113 80.5
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 3.9e-39 166.0 223 49.3
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-38 162.5 79 94.9
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-37 160.6 139 66.9
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 2.2e-37 160.2 162 56.8
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 4.8e-37 159.1 289 36.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.2e-37 158.3 155 58.1
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.5e-35 154.1 191 47.6
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-35 152.9 191 47.6
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.7e-34 150.6 78 83.3
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 2.2e-34 150.2 139 58.3
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-32 144.4 78 80.8
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.1e-32 142.1 240 39.6
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.3e-31 140.2 140 60.0
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 2.3e-31 140.2 128 65.6
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.1e-30 137.9 152 55.9
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 1.5e-30 137.5 252 39.3
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.7e-30 135.6 82 75.6
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 7.4e-30 135.2 68 94.1
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 7.4e-30 135.2 85 76.5
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 2.8e-29 133.3 195 47.7
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.8e-29 133.3 77 77.9
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.8e-29 133.3 159 46.5
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.1e-28 131.3 82 73.2
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.1e-28 129.4 185 48.1
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.4e-27 126.3 70 78.6
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.9e-27 125.6 86 69.8
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 5.9e-27 125.6 147 51.7
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.8e-26 122.9 86 68.6
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.4e-25 120.9 76 75.0
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.7e-24 115.9 194 42.3
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.1e-22 111.3 228 40.4
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-22 110.9 78 78.2
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 9.1e-20 101.7 53 86.8
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.0e-18 98.2 316 25.6
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 5.0e-18 95.9 53 83.0
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.9e-17 94.0 57 75.4
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 2.7e-16 90.1 94 56.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 4.7e-16 89.4 45 80.0
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.8e-12 77.4 54 74.1
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.6e-11 74.3 91 52.7
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.6e-11 73.6 54 68.5
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.9e-11 72.4 54 70.4
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 7.7e-11 72.0 165 37.0
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.9e-10 70.1 113 45.1
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.5e-10 68.6 95 49.5
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 4.2e-09 66.2 92 48.9
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 7.2e-09 65.5 95 47.4
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.2e-08 64.7 43 72.1
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-08 64.3 97 45.4
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.6e-06 57.0 46 63.0


User provided reference genes

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