Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 2.9e-61 238.4 126 100.0
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.2e-47 191.8 189 61.4
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.2e-47 191.8 189 61.4
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.2e-46 189.9 140 76.4
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.2e-46 189.9 140 76.4
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.2e-46 189.9 140 76.4
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.3e-45 186.4 168 64.3
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 5.0e-45 184.5 181 61.9
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.9e-44 182.6 189 60.3
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 1.9e-44 182.6 189 60.3
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 9.5e-44 180.3 184 58.7
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.6e-43 179.5 189 57.7
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.1e-43 179.1 184 59.8
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 2.8e-43 178.7 189 58.2
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 2.8e-43 178.7 189 58.2
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 4.7e-43 177.9 188 58.0
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 6.2e-43 177.6 188 58.5
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.2e-43 177.6 188 58.0
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 1.1e-42 176.8 184 59.2
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 1.8e-42 176.0 184 57.1
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 3.1e-42 175.3 189 59.3
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 4.0e-42 174.9 185 56.8
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 5.2e-42 174.5 188 56.4
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 6.8e-42 174.1 180 59.4
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 8.9e-42 173.7 185 57.3
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 1.5e-41 172.9 188 56.9
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 2.0e-41 172.6 184 56.5
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 2.0e-41 172.6 184 56.5
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.6e-41 172.2 184 56.5
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 7.5e-41 170.6 189 55.0
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.5e-41 170.6 184 57.1
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.5e-41 170.6 184 57.1
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.5e-41 170.6 184 57.1
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 1.3e-40 169.9 188 56.9
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.3e-40 169.9 186 55.9
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.3e-40 169.9 186 55.9
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 3.7e-40 168.3 190 56.8
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 4.9e-40 167.9 184 58.2
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 4.9e-40 167.9 189 54.0
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 8.3e-40 167.2 189 56.6
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 8.3e-40 167.2 186 54.8
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 1.1e-39 166.8 189 54.5
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 1.4e-39 166.4 189 56.1
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.2e-38 163.3 186 53.8
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 3.5e-38 161.8 184 56.0
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 7.8e-38 160.6 186 53.2
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 7.8e-38 160.6 188 53.7
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 1.0e-37 160.2 187 53.5
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.0e-37 160.2 187 53.5
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 1.0e-37 160.2 187 53.5
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 2.3e-37 159.1 184 53.8
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.3e-37 159.1 184 53.8
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 3.9e-37 158.3 186 53.2
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 1.1e-36 156.8 184 52.7
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.5e-36 156.4 161 58.4
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.3e-36 155.2 152 61.8
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-36 154.1 179 52.5
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 7.3e-36 154.1 179 52.5
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.2e-35 153.3 188 53.2
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.2e-35 153.3 187 52.4
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 1.4e-34 149.8 124 67.7
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 3.1e-34 148.7 179 52.0
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 3.4e-33 145.2 173 56.6
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 5.8e-33 144.4 168 54.2
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 8.4e-32 140.6 176 50.0
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 1.2e-30 136.7 182 48.9
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 5.1e-29 131.3 230 40.4
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 8.6e-29 130.6 188 47.9
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 2.5e-28 129.0 153 54.2
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 1.2e-27 126.7 159 53.5
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.7e-27 124.8 156 51.9
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 1.1e-26 123.6 160 50.6
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.1e-26 122.1 168 51.8
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 3.1e-26 122.1 71 88.7
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 5.2e-26 121.3 71 87.3
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 8.9e-26 120.6 168 51.2
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.2e-25 120.2 153 51.6
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.0e-25 119.4 90 75.6
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.0e-25 119.4 90 75.6
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 2.0e-25 119.4 64 95.3
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.0e-25 119.4 64 95.3
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 5.8e-25 117.9 162 45.1
FAN09G0092 Fragaria x ananassa HOM05D000107 ORTHO05D002484 7.6e-25 117.5 64 93.8
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 9.9e-25 117.1 161 49.1
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.3e-24 116.7 149 52.3
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.3e-24 116.7 158 49.4
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.7e-24 116.3 64 93.8
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.9e-24 115.5 70 84.3
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.4e-24 114.0 90 73.3
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.4e-24 114.0 138 52.9
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.1e-23 113.6 64 92.2
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.4e-23 113.2 127 55.9
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 3.2e-23 112.1 150 49.3
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.1e-23 110.9 90 72.2
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 7.1e-23 110.9 82 75.6
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.3e-21 106.7 169 46.7
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.3e-21 105.9 110 58.2
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 3.9e-21 105.1 55 100.0
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.5e-20 103.2 82 70.7
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.5e-20 103.2 64 81.2
Oeu029191.1 Olea europaea HOM05D000533 ORTHO05D002807 1.9e-20 102.8 110 53.6
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 1.9e-20 102.8 159 46.5
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 4.3e-20 101.7 167 48.5
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 3.6e-19 98.6 99 56.6
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 5.3e-18 94.7 55 87.3
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 6.9e-18 94.4 130 49.2
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.5e-17 93.2 181 39.8
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 1.5e-17 93.2 55 87.3
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 4.4e-17 91.7 55 89.1
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.8e-17 91.3 153 43.8
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 3.8e-16 88.6 55 85.5
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 4.9e-16 88.2 156 40.4
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 1.9e-15 86.3 66 69.7
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.9e-15 86.3 158 41.8
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 2.4e-15 85.9 85 57.6
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.2e-14 83.6 79 62.0
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-14 83.2 122 46.7
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-14 83.2 122 46.7
TPR.G9467 Trifolium pratense HOM05D000533 ORTHO05D002807 1.3e-13 80.1 43 95.3
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 2.3e-13 79.3 122 44.3
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 2.3e-13 79.3 122 44.3
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.3e-13 79.3 65 67.7
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 3.0e-13 79.0 55 72.7
BolC7t43857H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-13 77.8 40 95.0
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-13 77.8 40 95.0
BolSC37t60796H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-13 77.8 40 95.0
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 6.6e-13 77.8 40 95.0
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 6.6e-13 77.8 40 95.0
Nn8g40522 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.4e-12 74.3 41 92.7
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 3.6e-11 72.0 87 55.2
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.8e-11 71.6 53 69.8
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 8.1e-11 70.9 136 39.7
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.4e-10 69.3 53 69.8
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 5.3e-10 68.2 111 45.9
TPR.G37210 Trifolium pratense HOM05D000533 ORTHO05D002807 5.3e-10 68.2 41 75.6
Nitab4.5_0007979g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-08 63.5 38 86.8
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 2.9e-08 62.4 137 38.7
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 1.2e-06 57.0 38 76.3
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.1e-06 56.2 55 60.0
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.1e-06 56.2 37 78.4
Pp3c11_850 Physcomitrium patens HOM05D000533 ORTHO05D002807 3.5e-06 55.5 88 33.0
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 7.9e-06 54.3 61 50.8


User provided reference genes

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