Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 5.0e-92 341.3 195 100.0
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 6.8e-81 304.3 188 94.7
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 8.3e-79 297.4 188 93.1
HanXRQChr11g0333751 Helianthus annuus HOM05D001070 ORTHO05D002096 9.2e-54 214.2 134 97.0
HanXRQChr15g0465511 Helianthus annuus HOM05D001070 ORTHO05D002096 5.6e-51 204.9 134 93.3
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-47 193.4 142 71.8
HanXRQChr00c0379g0574331 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-47 192.6 127 92.9
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-47 192.6 127 92.9
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-47 192.6 127 92.9
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-47 192.6 127 92.9
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 2.9e-47 192.6 127 92.9
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.9e-47 191.8 128 78.1
HanXRQChr11g0321221 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-46 190.7 120 97.5
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.4e-46 188.3 133 75.2
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-45 187.2 135 74.1
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-45 187.2 135 74.1
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-45 187.2 135 74.1
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-45 187.2 135 74.1
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.2e-45 187.2 135 74.8
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.6e-45 186.8 143 74.8
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.1e-45 186.4 130 77.7
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.1e-45 186.4 130 77.7
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 3.5e-45 185.7 123 78.9
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 4.6e-45 185.3 139 71.2
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 7.8e-45 184.5 138 71.0
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 7.8e-45 184.5 138 71.0
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-44 184.1 135 74.1
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 1.0e-44 184.1 135 74.1
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 1.0e-44 184.1 137 73.7
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.0e-44 184.1 137 73.7
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 1.7e-44 183.3 130 76.2
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.7e-44 183.3 145 70.3
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 2.3e-44 183.0 142 70.4
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 3.0e-44 182.6 130 76.2
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.1e-44 181.8 136 70.6
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 5.1e-44 181.8 135 72.6
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 6.6e-44 181.4 137 73.0
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 207 52.7
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 128 75.8
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-44 181.0 145 70.3
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-43 180.6 139 70.5
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-43 180.3 143 69.9
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-43 179.9 126 77.0
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 2.5e-43 179.5 143 69.2
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.3e-43 179.1 140 67.1
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 3.3e-43 179.1 140 67.1
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 9.5e-43 177.6 125 76.8
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 9.5e-43 177.6 125 76.8
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-42 176.0 145 68.3
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 3.6e-42 175.6 118 92.4
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.6e-42 175.6 139 68.3
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.7e-42 175.3 143 67.1
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 8.9e-41 171.0 134 69.4
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.4e-40 168.7 143 65.7
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-39 166.0 120 72.5
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-39 166.0 145 65.5
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 3.9e-36 155.6 188 52.1
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 3.9e-36 155.6 145 63.4
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 6.6e-36 154.8 138 59.4
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 1.2e-34 150.6 79 97.5
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 1.2e-34 150.6 110 75.5
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.6e-34 149.1 99 77.8
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 1.5e-32 143.7 97 79.4
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 2.0e-32 143.3 142 60.6
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.6e-32 141.4 88 79.5
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.8e-31 139.0 83 83.1
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 8.4e-31 137.9 198 47.0
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.4e-30 137.1 123 60.2
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 2.4e-30 136.3 116 69.8
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.2e-29 134.0 237 38.4
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.6e-29 133.7 196 43.9
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 3.5e-29 132.5 130 60.0
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 4.6e-29 132.1 69 98.6
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 6.0e-29 131.7 145 55.9
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 7.8e-29 131.3 99 72.7
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 1.3e-28 130.6 68 98.5
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.7e-28 130.2 78 82.1
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 6.6e-28 128.3 69 95.7
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 8.7e-28 127.9 66 98.5
HanXRQChr14g0428451 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 69 95.7
HanXRQChr14g0428511 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 69 95.7
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-27 127.5 202 42.1
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 1.9e-27 126.7 129 53.5
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.5e-27 126.3 139 59.0
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 7.3e-27 124.8 69 94.2
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 9.6e-27 124.4 132 54.5
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-26 123.2 194 42.8
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 8.1e-26 121.3 143 52.4
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-24 117.5 68 85.3
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 3.4e-24 115.9 63 95.2
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.3e-23 114.0 68 85.3
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 2.2e-23 113.2 100 66.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 2.2e-23 113.2 133 47.4
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.3e-22 107.8 125 52.0
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 2.7e-21 106.3 198 41.4
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 3.9e-20 102.4 99 60.6
MELO3C030628.2 Cucumis melo HOM05D001070 ORTHO05D002096 2.5e-19 99.8 64 78.1
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 3.3e-19 99.4 116 48.3
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 7.4e-19 98.2 95 61.1
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 1.6e-18 97.1 52 98.1
Solyc01g017480.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.1e-18 94.7 62 77.4
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.1e-17 94.4 203 36.5
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 2.4e-17 93.2 53 88.7
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.0e-17 92.4 52 90.4
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 5.3e-17 92.0 69 73.9
Nitab4.5_0002691g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.5e-16 90.5 60 71.7
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.5e-16 89.0 52 86.5
Hund29395 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.5e-16 89.0 116 49.1
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.3e-15 87.4 64 73.4
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 6.4e-15 85.1 64 71.9
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 6.4e-15 85.1 64 71.9
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.2e-14 82.4 52 82.7
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 2.1e-13 80.1 69 65.2
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.7e-13 79.7 49 73.5
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 7.9e-13 78.2 45 86.7
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 7.9e-13 78.2 84 58.3
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.3e-12 77.4 127 44.9
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 3.0e-12 76.3 42 78.6
Oeu011447.1 Olea europaea HOM05D001070 ORTHO05D002096 6.7e-12 75.1 54 70.4
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 6.7e-12 75.1 84 57.1
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 8.7e-12 74.7 72 58.3
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.9e-11 73.6 51 74.5
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.9e-11 73.6 53 71.7
Oeu011446.1 Olea europaea HOM05D001070 ORTHO05D002096 2.5e-11 73.2 54 68.5
CsaV3_2G013000 Cucumis sativus L. HOM05D001070 ORTHO05D002096 3.3e-11 72.8 104 45.2
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 4.3e-11 72.4 56 66.1
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 4.3e-11 72.4 56 66.1
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 9.6e-11 71.2 62 61.3
Nitab4.5_0000705g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.2e-10 68.2 67 59.7
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.4e-09 67.4 71 53.5
HanXRQChr08g0222861 Helianthus annuus HOM05D001070 ORTHO05D002096 1.4e-09 67.4 63 84.1
Hund03954 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.5e-08 62.4 56 60.7
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.8e-08 62.0 140 35.0
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 3.8e-07 59.3 49 65.3
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 8.4e-07 58.2 82 47.6
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.1e-06 57.8 32 93.8
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 3.2e-06 56.2 80 48.8
TPR.G34535 Trifolium pratense HOM05D001070 ORTHO05D002096 4.2e-06 55.8 50 56.0


User provided reference genes

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