Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 4.4e-127 459.5 682 100.0
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 2.2e-110 404.1 659 96.4
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 2.4e-77 294.3 193 75.6
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 1.8e-56 224.9 194 59.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 4.4e-42 177.2 199 49.7
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 5.3e-40 170.2 200 47.0
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 5.9e-39 166.8 193 48.2
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.7e-38 165.2 207 45.9
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 8.5e-38 162.9 181 50.3
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.9e-37 161.8 146 54.1
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 3.2e-37 161.0 151 51.0
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 4.2e-37 160.6 199 45.2
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 4.2e-37 160.6 204 44.6
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 9.4e-37 159.5 199 46.2
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.2e-36 159.1 197 44.7
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 1.2e-36 159.1 192 45.3
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 1.2e-36 159.1 198 47.0
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.6e-36 158.7 198 43.9
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 3.6e-36 157.5 158 48.7
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 8.0e-36 156.4 200 43.5
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.0e-35 156.0 196 46.4
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.4e-35 155.6 195 45.1
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 3.0e-35 154.5 204 44.1
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 3.0e-35 154.5 200 45.0
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 5.2e-35 153.7 135 57.8
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 6.7e-35 153.3 201 46.3
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 6.7e-35 153.3 200 43.0
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 6.7e-35 153.3 146 52.1
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 1.1e-34 152.5 200 45.5
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.1e-34 152.5 204 42.2
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.5e-34 152.1 154 48.1
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 1.5e-34 152.1 206 43.7
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.5e-34 152.1 146 51.4
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.0e-34 151.8 146 51.4
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 2.6e-34 151.4 195 44.6
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.6e-34 151.4 195 44.1
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 3.3e-34 151.0 158 48.1
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 3.3e-34 151.0 194 45.4
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 5.7e-34 150.2 146 51.4
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.7e-34 150.2 199 42.7
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 1.3e-33 149.1 146 50.7
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.3e-33 149.1 153 46.4
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 4.8e-33 147.1 147 50.3
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 4.8e-33 147.1 147 50.3
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 8.2e-33 146.4 147 50.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 8.2e-33 146.4 146 52.7
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 3.1e-32 144.4 139 54.7
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 7.0e-32 143.3 145 50.3
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 7.0e-32 143.3 149 48.3
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.2e-31 142.5 144 48.6
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.7e-31 141.4 195 43.1
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 5.9e-31 140.2 145 49.7
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 1.0e-30 139.4 175 45.7
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 2.9e-30 137.9 192 42.7
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 4.2e-29 134.0 133 51.1
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 7.2e-29 133.3 135 45.2
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.2e-28 132.5 227 37.0
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.1e-28 131.7 145 47.6
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 3.0e-27 127.9 223 36.8
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 5.2e-27 127.1 178 39.9
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 7.5e-26 123.2 92 79.3
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 7.5e-26 123.2 92 78.3
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 9.8e-26 122.9 92 65.2
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.3e-25 122.5 92 77.2
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 6.3e-25 120.2 172 40.7
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 6.3e-25 120.2 135 43.7
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 1.1e-24 119.4 91 81.3
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.8e-24 118.6 94 72.3
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 3.1e-24 117.9 92 73.9
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 4.1e-24 117.5 92 73.9
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 7.0e-24 116.7 92 73.9
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 9.1e-24 116.3 92 73.9
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.6e-23 115.5 168 42.9
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.7e-23 114.8 91 75.8
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.7e-23 114.8 149 44.3
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 4.5e-23 114.0 171 38.6
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 5.9e-23 113.6 90 74.4
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 7.7e-23 113.2 92 73.9
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 7.7e-23 113.2 92 73.9
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.0e-22 112.8 92 73.9
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 1.7e-22 112.1 155 43.2
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.7e-22 112.1 92 72.8
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 2.9e-22 111.3 92 70.7
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.8e-22 110.9 92 72.8
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.8e-22 110.9 92 72.8
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 3.8e-22 110.9 85 78.8
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 8.5e-22 109.8 139 40.3
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 8.5e-22 109.8 85 80.0
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 8.5e-22 109.8 207 36.7
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.1e-21 109.4 92 71.7
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.5e-21 109.0 84 81.0
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.5e-21 108.2 85 76.5
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 4.2e-21 107.5 85 74.1
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.2e-21 107.5 84 77.4
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 6.1e-20 103.6 84 60.7
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 5.2e-19 100.5 142 44.4
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 3.4e-18 97.8 137 38.7
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-16 92.8 92 52.2
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 3.1e-16 91.3 87 48.3
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 4.5e-15 87.4 84 67.9
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 7.7e-15 86.7 104 45.2
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.3e-13 81.3 73 57.5
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 4.3e-13 80.9 113 39.8
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.6e-12 79.0 122 42.6
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.0e-11 76.3 66 75.8
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 4.4e-10 70.9 85 58.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 8.3e-09 66.6 60 55.0
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 2.4e-08 65.1 56 60.7


User provided reference genes

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