Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557111 Helianthus annuus HOM05D002560 ORTHO05D003782 9.1e-53 209.9 102 100.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 3.0e-32 141.7 77 89.6
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 7.5e-31 137.1 77 85.7
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 2.3e-27 125.6 77 79.2
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 2.3e-27 125.6 77 75.3
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.8e-27 124.8 77 76.6
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 5.0e-27 124.4 77 76.6
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 6.5e-27 124.0 77 74.0
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 8.6e-27 123.6 76 76.3
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 8.6e-27 123.6 77 72.7
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.5e-26 122.1 77 74.0
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 2.5e-26 122.1 77 71.4
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 70.1
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 74.0
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 74.0
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 3.3e-26 121.7 77 71.4
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 4.2e-26 121.3 77 71.4
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 4.2e-26 121.3 77 74.0
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 4.2e-26 121.3 77 72.7
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 5.5e-26 120.9 77 72.7
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 7.2e-26 120.6 77 71.4
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 7.2e-26 120.6 77 74.0
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 7.2e-26 120.6 77 74.0
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 7.2e-26 120.6 77 72.7
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 9.5e-26 120.2 77 71.4
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.2e-25 119.8 77 72.7
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 1.2e-25 119.8 77 70.1
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.2e-25 119.8 77 72.7
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.2e-25 119.8 77 72.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 1.2e-25 119.8 77 74.0
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.6e-25 119.4 77 71.4
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.6e-25 119.4 77 71.4
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.6e-25 119.4 77 72.7
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 2.1e-25 119.0 74 77.0
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 2.1e-25 119.0 77 70.1
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 2.8e-25 118.6 77 70.1
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 2.8e-25 118.6 77 70.1
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 2.8e-25 118.6 77 72.7
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 2.8e-25 118.6 77 71.4
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 3.6e-25 118.2 76 72.4
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 3.6e-25 118.2 77 72.7
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.6e-25 118.2 77 70.1
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 68.8
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 68.8
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 70.1
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 6.1e-25 117.5 77 68.8
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 8.0e-25 117.1 77 70.1
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.0e-25 117.1 77 70.1
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.0e-25 117.1 77 70.1
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 8.0e-25 117.1 77 71.4
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.0e-24 116.7 77 70.1
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.0e-24 116.7 77 70.1
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 1.0e-24 116.7 79 67.1
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.0e-24 116.7 77 67.5
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.0e-24 116.7 77 70.1
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.0e-24 116.7 77 68.8
MELO3C000388.2 Cucumis melo HOM05D002560 ORTHO05D003782 1.4e-24 116.3 77 67.5
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.4e-24 116.3 77 67.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.4e-24 116.3 77 67.5
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.4e-24 116.3 77 68.8
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.4e-24 116.3 77 68.8
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.8e-24 115.9 77 71.4
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 1.8e-24 115.9 77 70.1
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 2.3e-24 115.5 77 67.5
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 2.3e-24 115.5 77 68.8
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.3e-24 115.5 76 71.1
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.3e-24 115.5 77 70.1
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 3.0e-24 115.2 77 67.5
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 4.0e-24 114.8 76 72.4
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 4.0e-24 114.8 75 72.0
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 4.0e-24 114.8 77 70.1
Actinidia32554 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 67.5
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 67.5
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 67.5
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 67.5
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 66.2
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.2e-24 114.4 77 67.5
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 6.8e-24 114.0 77 66.2
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 8.9e-24 113.6 77 66.2
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.2e-23 113.2 76 71.1
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.2e-23 113.2 77 66.2
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 1.2e-23 113.2 77 68.8
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.2e-23 113.2 77 68.8
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 1.5e-23 112.8 77 66.2
Sopen10g027940 Solanum pennellii HOM05D002560 ORTHO05D003782 1.5e-23 112.8 77 67.5
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.5e-23 112.8 77 64.9
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.5e-23 112.8 77 66.2
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 2.0e-23 112.5 77 67.5
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.0e-23 112.5 77 66.2
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 2.6e-23 112.1 77 68.8
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 2.6e-23 112.1 77 67.5
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 2.6e-23 112.1 80 66.2
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.6e-23 112.1 77 68.8
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 3.4e-23 111.7 77 66.2
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 3.4e-23 111.7 77 64.9
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 3.4e-23 111.7 77 66.2
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 3.4e-23 111.7 77 67.5
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.4e-23 111.7 77 66.2
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 4.4e-23 111.3 77 66.2
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 5.7e-23 110.9 75 68.0
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 5.7e-23 110.9 75 68.0
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 5.7e-23 110.9 75 68.0
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 5.7e-23 110.9 75 68.0
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 5.7e-23 110.9 77 63.6
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 7.5e-23 110.5 77 66.2
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 9.8e-23 110.2 77 63.6
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 9.8e-23 110.2 77 67.5
CAN.G133.1 Capsicum annuum HOM05D002560 ORTHO05D003782 9.8e-23 110.2 77 67.5
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 1.3e-22 109.8 77 63.6
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.2e-22 109.0 77 64.9
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.2e-22 109.0 77 68.8
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 2.8e-22 108.6 77 62.3
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.7e-22 108.2 77 64.9
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.9e-22 107.8 77 62.3
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 6.3e-22 107.5 77 64.9
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.1e-21 106.7 77 63.6
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.4e-21 106.3 77 63.6
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.8e-21 105.9 77 62.3
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.1e-21 105.1 77 62.3
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.1e-21 105.1 77 61.0
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 4.1e-21 104.8 84 58.3
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 5.4e-21 104.4 77 62.3
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 5.4e-21 104.4 85 58.8
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 5.4e-21 104.4 85 58.8
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 7.0e-21 104.0 75 66.7
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.2e-20 103.2 77 62.3
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.2e-20 103.2 75 65.3
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.2e-20 103.2 84 59.5
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.6e-20 102.8 75 64.0
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.0e-20 102.4 77 63.6
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.5e-20 101.7 80 60.0
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 3.5e-20 101.7 102 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 4.5e-20 101.3 101 49.5
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.5e-20 101.3 76 63.2
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.9e-20 100.9 91 51.6
Haze_01994 Corylus avellana HOM05D002560 ORTHO05D003782 7.8e-20 100.5 77 61.0
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.0e-19 100.1 77 58.4
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.0e-19 100.1 76 60.5
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 2.9e-19 98.6 77 55.8
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.8e-19 98.2 77 62.3
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.0e-19 97.8 77 54.5
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 6.6e-19 97.4 77 61.0
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 8.6e-19 97.1 77 61.0
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.5e-18 96.3 77 59.7
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 1.2e-17 93.2 73 65.8
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 1.2e-17 93.2 76 57.9
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 8.0e-17 90.5 77 57.1
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 1.0e-16 90.1 76 56.6
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.8e-16 89.4 80 55.0
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 2.3e-16 89.0 80 53.8
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 2.3e-16 89.0 76 56.6
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 2.3e-16 89.0 76 56.6
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 4.4e-15 84.7 74 56.8
Lsat_1_v5_gn_7_60421 Lactuca sativa HOM05D002560 ORTHO05D003782 7.5e-15 84.0 48 77.1
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.3e-14 83.2 73 52.1
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 2.0e-12 75.9 62 54.8
MD12G1183800 Malus domestica HOM05D002560 ORTHO05D003782 2.0e-12 75.9 48 64.6
GSVIVG01030230001 Vitis vinifera HOM05D002560 ORTHO05D003782 2.6e-07 58.9 33 75.8
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 2.9e-06 55.5 77 46.8
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 6.4e-06 54.3 77 37.7


User provided reference genes

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