Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.7e-123 446.0 237 100.0
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 4.7e-60 235.3 184 66.8
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.6e-52 210.3 213 58.7
Lsat_1_v5_gn_1_2860 Lactuca sativa HOM05D004728 ORTHO05D002375 4.4e-50 202.2 219 55.7
Lsat_1_v5_gn_1_2940 Lactuca sativa HOM05D004728 ORTHO05D002375 2.2e-49 199.9 189 59.3
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 6.6e-38 161.8 157 58.6
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 2.8e-28 129.8 162 43.8
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 6.6e-22 108.6 154 39.0
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 9.6e-21 104.8 146 40.4
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 2.8e-20 103.2 160 36.9
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 3.6e-20 102.8 160 37.5
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 1.4e-19 100.9 163 36.8
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.4e-19 100.9 137 37.2
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 2.6e-18 96.7 151 37.1
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 7.6e-18 95.1 197 31.5
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 9.9e-18 94.7 158 34.2
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 2.2e-17 93.6 143 36.4
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 3.8e-17 92.8 156 35.3
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 4.9e-17 92.4 124 37.1
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 8.4e-17 91.7 158 36.7
Lsat_1_v5_gn_1_2800 Lactuca sativa HOM05D037404 ORTHO05D035140 8.4e-17 91.7 173 35.8
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.4e-16 90.9 158 32.9
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.9e-16 90.5 141 33.3
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 2.4e-16 90.1 153 34.6
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.4e-16 90.1 164 31.7
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 2.7e-15 86.7 146 37.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.5e-15 86.3 153 31.4
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.6e-15 85.9 131 34.4
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.6e-15 85.9 131 34.4
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 4.6e-15 85.9 182 32.4
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 6.0e-15 85.5 135 35.6
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.0e-14 84.7 153 30.7
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 1.0e-14 84.7 154 34.4
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.0e-14 84.7 155 29.0
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 1.3e-14 84.3 126 35.7
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 1.3e-14 84.3 163 33.1
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.3e-14 83.6 151 33.8
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.9e-14 82.8 142 31.7
HanXRQChr17g0556291 Helianthus annuus HOM05D004728 ORTHO05D002375 6.6e-14 82.0 160 29.4
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 1.9e-13 80.5 113 31.9
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.9e-13 80.5 203 34.5
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.9e-13 80.5 131 32.8
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 1.9e-13 80.5 116 32.8
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 2.5e-13 80.1 124 32.3
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.3e-13 79.7 159 34.6
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 4.3e-13 79.3 125 32.8
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.3e-12 77.8 154 27.9
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.3e-12 77.8 178 30.9
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.3e-12 77.8 158 36.1
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 2.1e-12 77.0 139 33.8
MELO3C011050.2 Cucumis melo HOM05D039494 ORTHO05D002375 3.6e-12 76.3 136 30.9
ECA232G1403 Erigeron canadensis HOM05D000469 ORTHO05D000131 3.6e-12 76.3 144 32.6
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 3.6e-12 76.3 136 35.3
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 4.8e-12 75.9 173 32.9
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 4.8e-12 75.9 158 31.0
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 6.2e-12 75.5 202 26.2
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 6.2e-12 75.5 137 28.5
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 8.1e-12 75.1 127 36.2
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 8.1e-12 75.1 148 30.4
SalBow7G1327 Salvia bowleyana HOM05D004728 ORTHO05D002375 8.1e-12 75.1 160 29.4
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 1.1e-11 74.7 191 28.3
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.1e-11 74.7 159 28.9
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 1.1e-11 74.7 127 30.7
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.4e-11 74.3 158 29.1
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 1.8e-11 73.9 116 31.0
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.8e-11 73.9 116 31.0
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.8e-11 73.9 147 27.9
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.4e-11 73.6 211 26.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 2.4e-11 73.6 117 28.2
MSTRG.3754 Avicennia marina HOM05D004728 ORTHO05D002375 3.1e-11 73.2 149 28.9
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.1e-11 73.2 212 27.8
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 4.0e-11 72.8 136 30.1
PSO541G3905 Papaver somniferum HOM05D015253 ORTHO05D023059 4.0e-11 72.8 89 38.2
PSO675G1823 Papaver somniferum HOM05D015253 ORTHO05D023059 4.0e-11 72.8 142 32.4
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.3e-11 72.4 213 26.3
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.3e-11 72.4 213 25.8
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 6.9e-11 72.0 163 29.4
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 1.5e-10 70.9 196 26.5
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 2.0e-10 70.5 187 25.7
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 2.0e-10 70.5 160 31.2
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.6e-10 70.1 167 26.9
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 3.4e-10 69.7 120 30.0
Glyma.02G210100 Glycine max HOM05D012119 ORTHO05D002375 3.4e-10 69.7 176 27.3
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 5.8e-10 68.9 152 27.6
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 5.8e-10 68.9 198 29.8
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 7.6e-10 68.6 132 31.1
Lsat_1_v5_gn_9_73380 Lactuca sativa HOM05D004728 ORTHO05D002375 7.6e-10 68.6 155 31.0
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 7.6e-10 68.6 159 30.8
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 9.9e-10 68.2 164 23.8
Lsat_1_v5_gn_1_2780 Lactuca sativa HOM05D004728 ORTHO05D002375 1.3e-09 67.8 145 31.7
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.3e-09 67.8 157 25.5
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 1.7e-09 67.4 156 31.4
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.7e-09 67.4 212 27.8
CsaV3_2G029920 Cucumis sativus L. HOM05D039494 ORTHO05D002375 2.2e-09 67.0 188 27.1
PSO675G4345 Papaver somniferum HOM05D015253 ORTHO05D023059 2.2e-09 67.0 143 30.1
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 2.9e-09 66.6 147 30.6
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 2.9e-09 66.6 121 28.9
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.8e-09 66.2 133 36.8
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 3.8e-09 66.2 125 29.6
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 3.8e-09 66.2 118 27.1
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 3.8e-09 66.2 149 33.6
Migut.H02321 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.4e-09 65.5 117 30.8
GSVIVG01003435001 Vitis vinifera HOM05D004728 ORTHO05D002375 6.4e-09 65.5 108 28.7
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 8.4e-09 65.1 155 29.0
Sopen05g029860 Solanum pennellii HOM05D000436 ORTHO05D001944 8.4e-09 65.1 139 30.9
Lsat_1_v5_gn_1_2980 Lactuca sativa HOM05D004728 ORTHO05D002375 1.1e-08 64.7 108 33.3
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 1.1e-08 64.7 147 30.6
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.1e-08 64.7 136 28.7
Hund23288 Selenicereus undatus HOM05D004728 ORTHO05D002375 1.4e-08 64.3 154 25.3
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 1.4e-08 64.3 158 27.8
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 1.9e-08 63.9 160 27.5
PSO700G0018 Papaver somniferum HOM05D015253 ORTHO05D002375 1.9e-08 63.9 83 36.1
Os04g0450600 Oryza sativa ssp. japonica HOM05D021312 ORTHO05D012887 2.4e-08 63.5 204 28.4
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.2e-08 63.2 134 27.6
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.2e-08 63.2 105 28.6
Lsat_1_v5_gn_9_73501 Lactuca sativa HOM05D004728 ORTHO05D002375 3.2e-08 63.2 172 28.5
Solyc05g051450.2 Solanum lycopersicum HOM05D019315 ORTHO05D002375 3.2e-08 63.2 178 28.1
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 4.2e-08 62.8 155 26.5
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 4.2e-08 62.8 157 28.0
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 7.1e-08 62.0 122 26.2
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 7.1e-08 62.0 130 28.5
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.3e-08 61.6 162 27.2
HanXRQChr17g0556301 Helianthus annuus HOM05D037404 ORTHO05D035140 9.3e-08 61.6 147 32.7
Zm00001eb081280 Zea mays HOM05D021312 ORTHO05D012887 9.3e-08 61.6 168 29.8
SGA_v2.0_scaffold115G32157 Striga asiatica HOM05D004728 ORTHO05D002375 1.6e-07 60.8 136 29.4
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.1e-07 60.5 135 27.4
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.1e-07 60.5 169 26.6
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 2.7e-07 60.1 140 25.7
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 2.7e-07 60.1 158 25.9
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 2.7e-07 60.1 160 26.9
PSO541G5620 Papaver somniferum HOM05D015253 ORTHO05D023059 2.7e-07 60.1 222 26.6
Peaxi162Scf00044g01721 Petunia axillaris HOM05D019315 ORTHO05D002375 2.7e-07 60.1 208 26.9
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 3.5e-07 59.7 107 32.7
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 3.5e-07 59.7 98 31.6
Oeu002157.4 Olea europaea HOM05D004728 ORTHO05D002375 3.5e-07 59.7 127 26.8
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 3.5e-07 59.7 153 30.1
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 3.5e-07 59.7 118 29.7
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 4.6e-07 59.3 137 27.7
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 7.9e-07 58.5 128 25.8
PGSC0003DMG400030842 Solanum tuberosum HOM05D012586 ORTHO05D012196 7.9e-07 58.5 168 28.0
PSO675G0090 Papaver somniferum HOM05D015253 ORTHO05D023059 1.0e-06 58.2 146 27.4
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 1.0e-06 58.2 115 28.7
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 1.0e-06 58.2 155 23.9
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.3e-06 57.8 157 24.8
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 1.3e-06 57.8 161 24.2
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 1.3e-06 57.8 137 27.0
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.7e-06 57.4 161 24.8
Lj4C95T1 Lonicera japonica HOM05D004728 ORTHO05D002375 1.7e-06 57.4 72 44.4
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 1.7e-06 57.4 109 28.4
SalBow3G1954 Salvia bowleyana HOM05D004728 ORTHO05D002375 1.7e-06 57.4 197 23.4
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 1.7e-06 57.4 153 28.8
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.3e-06 57.0 115 27.8
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 2.3e-06 57.0 124 24.2
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.3e-06 57.0 220 23.2
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 2.3e-06 57.0 160 26.2
TAR376G0192 Trochodendron aralioides HOM05D004728 ORTHO05D002375 2.3e-06 57.0 68 41.2
AUR62018980 Chenopodium quinoa HOM05D059013 ORTHO05D002375 3.0e-06 56.6 69 40.6
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 3.0e-06 56.6 165 23.0
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 3.0e-06 56.6 165 23.0
Glyma.14G177800 Glycine max HOM05D012119 ORTHO05D002375 3.0e-06 56.6 128 29.7
Nitab4.5_0002996g0010 Nicotiana tabacum HOM05D019315 ORTHO05D002375 3.0e-06 56.6 148 29.7
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 3.9e-06 56.2 155 27.7
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 3.9e-06 56.2 111 27.9
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 3.9e-06 56.2 80 33.8
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 3.9e-06 56.2 198 23.2
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 3.9e-06 56.2 93 28.0
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.9e-06 56.2 163 26.4
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 5.1e-06 55.8 184 25.5
DCAR_003464 Daucus carota HOM05D004728 ORTHO05D002375 5.1e-06 55.8 60 40.0
Dinv13237 Davidia involucrata HOM05D004728 ORTHO05D002375 5.1e-06 55.8 158 24.7
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 8.7e-06 55.1 125 22.4
ClCG08G011340 Citrullus lanatus HOM05D039494 ORTHO05D002375 8.7e-06 55.1 150 26.7


User provided reference genes

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