Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.2e-267 925.2 535 100.0
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.1e-44 184.5 484 39.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.9e-30 137.1 568 32.7
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 9.7e-29 132.5 458 34.3
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.7e-25 121.7 201 43.8
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.5e-25 119.8 324 36.4
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.1e-24 119.0 435 31.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 9.4e-24 115.9 201 41.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.2e-23 115.5 203 44.3
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 6.1e-23 113.2 287 34.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.0e-22 110.9 292 35.3
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 8.8e-22 109.4 486 30.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-21 107.8 346 31.2
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 5.7e-21 106.7 302 33.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 7.4e-21 106.3 413 31.0
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.8e-20 104.4 431 30.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.4e-19 102.1 438 29.0
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.8e-19 101.7 377 28.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.1e-19 100.5 131 48.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.2e-18 99.0 400 30.0
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.5e-18 98.6 282 35.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.0e-18 98.2 264 36.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.6e-18 97.8 180 41.7
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 5.9e-18 96.7 215 37.2
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.0e-17 95.9 315 30.2
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.3e-17 95.5 221 37.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.7e-17 95.1 310 33.5
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.2e-17 94.7 174 43.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.2e-17 94.7 412 30.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.4e-16 92.0 388 31.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.4e-16 92.0 293 34.1
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.5e-16 91.3 298 33.6
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.2e-16 90.5 439 28.7
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 5.5e-16 90.1 473 29.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 7.2e-16 89.7 456 27.6
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 7.2e-16 89.7 283 33.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 7.2e-16 89.7 300 31.7
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.2e-15 89.0 456 28.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-15 89.0 251 34.3
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-15 89.0 251 34.3
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.6e-15 88.6 259 32.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 2.1e-15 88.2 379 30.1
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.7e-15 87.8 170 39.4
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.7e-15 87.8 170 39.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.6e-15 87.4 310 32.3
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.7e-15 87.0 417 27.6
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.7e-15 87.0 315 30.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.7e-15 87.0 641 27.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.1e-15 86.7 300 33.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 7.9e-15 86.3 434 29.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 7.9e-15 86.3 417 30.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.0e-14 85.9 399 28.3
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.0e-14 85.9 310 31.9
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.4e-14 85.5 406 30.5
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.8e-14 85.1 261 36.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.3e-14 84.7 170 41.8
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.3e-14 84.7 302 34.4
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.3e-14 84.7 424 28.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-14 84.3 590 25.9
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 8.8e-14 82.8 183 37.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.8e-14 82.8 507 27.6
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-13 82.0 410 27.3
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.5e-13 82.0 621 27.4
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 2.0e-13 81.6 343 29.7
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.3e-13 80.9 127 44.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 9.7e-13 79.3 231 34.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 9.7e-13 79.3 317 30.6
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.3e-12 79.0 308 29.5
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.3e-12 79.0 262 36.6
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.7e-12 78.6 441 27.9
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.7e-12 78.6 611 25.4
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-12 78.2 427 26.2
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-12 78.2 443 29.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.2e-12 78.2 359 27.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.2e-12 78.2 264 32.2
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.2e-12 78.2 105 50.5
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.8e-12 77.8 389 27.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 4.8e-12 77.0 310 28.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.4e-11 75.5 418 28.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-11 75.1 449 25.2
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.8e-11 75.1 479 29.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 2.4e-11 74.7 135 43.0
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.4e-11 74.7 259 32.8
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.1e-11 74.3 614 25.2
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.1e-11 74.3 436 28.9
HanXRQChr17g0541641 Helianthus annuus HOM05D004299 ORTHO05D003557 5.3e-11 73.6 389 29.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.0e-11 73.2 287 31.7
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 7.0e-11 73.2 279 31.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 7.0e-11 73.2 451 25.5
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 7.0e-11 73.2 147 39.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.1e-11 72.8 579 25.4
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.2e-10 72.4 191 35.1
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.5e-10 72.0 455 28.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.6e-10 71.2 251 32.3
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.5e-10 70.9 668 24.1
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.5e-10 70.9 243 29.2
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.5e-10 70.9 296 30.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 5.9e-10 70.1 409 28.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 5.9e-10 70.1 321 28.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 7.7e-10 69.7 454 26.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.3e-09 68.9 288 29.9
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.7e-09 68.6 429 26.1
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.7e-09 68.6 38 86.8
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.7e-09 68.6 38 86.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.7e-09 68.6 445 29.0
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.9e-09 67.8 272 32.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.9e-09 67.8 296 30.4
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.8e-09 67.4 290 31.4
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 5.0e-09 67.0 439 27.1
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 6.5e-09 66.6 416 26.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 8.5e-09 66.2 371 25.6
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 8.5e-09 66.2 371 25.6
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 8.5e-09 66.2 564 25.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 8.5e-09 66.2 39 79.5
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-08 65.9 529 26.1
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-08 65.9 529 26.1
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-08 65.9 279 29.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.4e-08 65.5 192 36.5
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.9e-08 65.1 221 33.0
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.5e-08 64.7 433 27.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.2e-08 64.3 585 26.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 5.5e-08 63.5 293 31.1
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.4e-08 62.8 272 30.9
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-07 62.0 473 25.8
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.1e-07 61.6 64 48.4
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.6e-07 60.8 412 24.0
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.6e-07 60.8 152 37.5
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 6.1e-07 60.1 394 25.6
Lsat_1_v5_gn_4_37260 Lactuca sativa HOM05D004299 ORTHO05D003557 1.4e-06 58.9 209 34.0
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.3e-06 58.2 547 25.4
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.0e-06 57.8 33 78.8
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 5.2e-06 57.0 88 44.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.2e-06 57.0 443 26.6


User provided reference genes

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