Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.7e-290 1001.9 498 100.0
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-223 780.0 513 78.9
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.5e-172 609.4 505 62.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.9e-157 558.9 547 56.5
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.9e-157 558.9 547 56.5
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 3.4e-153 545.8 544 55.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.9e-152 542.7 521 57.0
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 6.0e-150 535.0 550 53.3
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.5e-148 530.4 527 55.8
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 6.2e-147 525.0 471 61.4
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.1e-146 522.7 552 53.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.5e-145 520.4 532 54.1
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.5e-145 520.4 518 55.2
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.5e-145 518.8 546 53.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 7.6e-145 518.1 514 54.3
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 8.4e-144 514.6 523 54.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.5e-143 511.9 537 53.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.0e-141 507.7 511 54.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.0e-141 507.7 511 54.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.8e-141 506.9 537 52.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.9e-141 505.8 508 55.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.6e-140 501.9 523 52.2
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 9.6e-140 501.1 531 52.4
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.3e-139 500.7 533 52.2
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-139 500.7 511 53.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 2.8e-139 499.6 518 53.1
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.7e-139 499.2 520 51.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 8.1e-139 498.0 511 52.6
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 8.1e-139 498.0 511 53.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.0e-138 495.7 517 53.2
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 4.0e-138 495.7 518 51.7
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.9e-138 495.0 543 51.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 3.4e-137 492.7 548 51.5
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 5.8e-137 491.9 537 52.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.7e-136 490.3 515 51.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.9e-136 489.6 516 53.9
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.9e-136 489.6 530 52.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 4.9e-136 488.8 524 52.3
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-135 487.6 531 52.2
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.1e-135 487.6 525 53.3
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 4.2e-135 485.7 525 52.0
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.2e-135 485.7 527 53.1
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 7.1e-135 485.0 530 51.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 9.3e-135 484.6 518 51.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.1e-134 483.4 525 51.6
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.3e-133 479.9 549 49.4
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 5.1e-133 478.8 513 50.7
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.5e-132 477.2 515 51.1
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.5e-132 476.5 520 49.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 3.3e-132 476.1 541 49.5
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.3e-132 475.7 541 48.4
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.4e-132 474.9 545 50.6
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.1e-131 473.4 523 48.8
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 3.7e-131 472.6 529 49.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 6.3e-131 471.9 518 51.4
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.1e-130 469.2 517 50.5
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 6.9e-130 468.4 512 51.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 7.6e-129 464.9 517 48.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.7e-128 463.8 536 48.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-127 460.7 520 48.8
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.2e-127 459.5 521 48.8
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 9.3e-127 458.0 506 49.4
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.2e-126 457.6 524 49.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.6e-126 457.2 514 50.2
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-125 454.1 520 48.5
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.0e-125 453.0 521 50.1
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 8.7e-125 451.4 516 48.4
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 9.7e-124 448.0 509 50.9
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.6e-123 447.2 542 46.3
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.2e-123 446.8 521 49.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 4.8e-123 445.7 511 49.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.6e-121 439.9 511 48.3
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.7e-121 438.3 546 47.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.9e-120 436.4 538 46.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.2e-119 433.0 499 44.3
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 4.2e-119 432.6 505 44.4
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 7.2e-119 431.8 507 44.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 9.4e-119 431.4 514 44.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.1e-118 430.3 498 45.6
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.7e-118 429.9 505 44.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 3.6e-118 429.5 506 44.5
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.0e-117 427.9 514 45.7
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 3.9e-117 426.0 511 44.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 5.1e-117 425.6 498 45.4
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.1e-116 424.5 523 44.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-116 424.5 478 50.8
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-115 420.6 499 44.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.8e-115 419.9 508 44.1
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.4e-114 417.5 498 44.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.8e-114 417.2 497 44.5
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 4.1e-114 416.0 507 43.8
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.5e-113 414.1 502 42.0
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.0e-112 411.4 509 48.7
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.9e-112 409.8 501 46.3
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.9e-112 409.8 500 44.4
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.9e-111 407.1 501 44.7
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.1e-110 403.7 497 46.3
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.4e-109 401.0 517 45.6
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.8e-109 400.6 499 45.9
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.3e-107 392.1 488 44.5
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.4e-106 391.0 492 43.3
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.1e-106 389.8 554 41.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.0e-106 388.7 466 49.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.0e-105 387.1 528 42.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.7e-104 384.0 518 43.4
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.7e-102 376.7 506 44.3
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.3e-101 373.6 510 43.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.5e-100 370.9 511 42.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.0e-100 370.5 508 42.1
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.6e-100 370.2 550 41.8
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.2e-99 367.1 511 42.3
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 4.2e-95 352.8 523 40.2
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 2.1e-94 350.5 521 40.3
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-90 338.2 488 40.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.4e-90 337.0 500 41.4
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 3.5e-89 333.2 506 38.7
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 6.1e-86 322.4 402 43.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 6.1e-86 322.4 478 40.8
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-83 313.2 492 39.6
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-83 313.2 492 39.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-81 307.8 509 40.5
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 7.3e-79 298.9 539 36.7
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-78 295.4 452 40.3
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-78 295.4 452 40.3
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.4e-67 259.2 482 34.0
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-64 251.5 450 39.3
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-64 251.5 450 39.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-63 248.4 387 41.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.4e-61 241.5 502 32.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.3e-47 193.7 270 44.4
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 9.9e-44 182.2 171 53.8
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 9.3e-42 175.6 308 37.3
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.1e-40 169.9 542 27.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.8e-38 163.3 142 58.5
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 6.9e-37 159.5 499 27.7
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.2e-36 158.7 497 27.2
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.2e-35 154.5 464 29.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.3e-30 138.7 144 50.0
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.8e-30 137.5 429 27.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.6e-30 137.1 413 29.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 4.0e-29 133.7 408 25.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-20 105.1 282 31.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 6.5e-19 99.8 491 23.4
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 8.4e-19 99.4 477 24.9
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-18 97.8 83 57.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.9e-16 90.5 380 24.7
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 3.3e-15 87.4 68 63.2
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 8.2e-14 82.8 81 48.1
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.2e-12 79.0 57 57.9
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 3.4e-12 77.4 58 60.3
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.4e-10 72.0 358 21.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.9e-10 71.6 128 29.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 5.5e-10 70.1 173 32.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 4.6e-09 67.0 110 32.7
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 4.6e-09 67.0 203 28.1
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 7.9e-09 66.2 196 28.6
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 7.4e-07 59.7 185 27.0
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-06 58.5 86 38.4


User provided reference genes

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