Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0553291 Helianthus annuus HOM05D001108 ORTHO05D001619 5.0e-125 451.1 219 100.0
MSTRG.5556 Avicennia marina HOM05D001108 ORTHO05D001619 1.2e-28 131.0 221 42.5
DCAR_024006 Daucus carota HOM05D001108 ORTHO05D001619 5.7e-28 128.6 221 41.6
ECA236G2808 Erigeron canadensis HOM05D001108 ORTHO05D001619 1.7e-27 127.1 222 42.8
HanXRQChr06g0181481 Helianthus annuus HOM05D001108 ORTHO05D001619 2.8e-27 126.3 222 41.9
HanXRQChr06g0181491 Helianthus annuus HOM05D001108 ORTHO05D001619 2.8e-27 126.3 222 41.9
Lsat_1_v5_gn_8_101881 Lactuca sativa HOM05D001108 ORTHO05D001619 2.8e-27 126.3 221 40.7
MSTRG.5729 Avicennia marina HOM05D001108 ORTHO05D001619 6.3e-27 125.2 222 40.1
Hma1.2p1_0501F.1_g167590 Hydrangea macrophylla HOM05D001108 ORTHO05D001619 8.2e-27 124.8 215 40.9
Peaxi162Scf00264g00511 Petunia axillaris HOM05D001108 ORTHO05D001619 8.2e-27 124.8 223 39.5
Cc06_g00970 Coffea canephora HOM05D001108 ORTHO05D001619 4.1e-26 122.5 215 40.9
vmacro20311 Vaccinium macrocarpon HOM05D001108 ORTHO05D001619 4.1e-26 122.5 185 43.8
Dinv08442 Davidia involucrata HOM05D001108 ORTHO05D001619 7.0e-26 121.7 208 42.8
Oeu027338.1 Olea europaea HOM05D001108 ORTHO05D001619 7.0e-26 121.7 221 38.9
Dinv12138 Davidia involucrata HOM05D001108 ORTHO05D001619 9.1e-26 121.3 208 42.3
Actinidia11560 Actinidia chinensis HOM05D001108 ORTHO05D001619 1.2e-25 120.9 214 39.7
Oeu057629.1 Olea europaea HOM05D001108 ORTHO05D001619 2.0e-25 120.2 221 38.5
Rhsim05G0222900 Rhododendron simsii HOM05D001108 ORTHO05D001619 2.7e-25 119.8 185 43.8
Actinidia29083 Actinidia chinensis HOM05D001108 ORTHO05D001619 3.5e-25 119.4 184 42.9
THA.LOC104823298 Tarenaya hassleriana HOM05D001108 ORTHO05D001619 3.5e-25 119.4 214 40.2
CANSAT35G0939 Cannabis sativa HOM05D001108 ORTHO05D001619 7.7e-25 118.2 208 40.4
SalBow4G1750 Salvia bowleyana HOM05D001108 ORTHO05D001619 7.7e-25 118.2 222 40.1
SalBow4G2586 Salvia bowleyana HOM05D001108 ORTHO05D001619 7.7e-25 118.2 222 40.1
Aqoxy2G00131 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 1.0e-24 117.9 238 37.8
Sopen09g001020 Solanum pennellii HOM05D001108 ORTHO05D001619 1.7e-24 117.1 220 39.5
PGSC0003DMG400026641 Solanum tuberosum HOM05D001108 ORTHO05D001619 1.7e-24 117.1 220 39.5
Peaxi162Scf01132g00335 Petunia axillaris HOM05D001108 ORTHO05D001619 2.2e-24 116.7 222 39.2
Migut.J00122 Erythranthe guttata HOM05D001108 ORTHO05D001619 3.8e-24 115.9 222 38.3
Sc22g0002620 Simmondsia chinensis HOM05D001108 ORTHO05D001619 3.8e-24 115.9 215 38.6
SalBow5G0005 Salvia bowleyana HOM05D001108 ORTHO05D001619 6.5e-24 115.2 242 36.0
AL3G19960 Arabidopsis lyrata HOM05D001108 ORTHO05D001619 1.1e-23 114.4 214 38.8
A05p39900 Brassica napus HOM05D001108 ORTHO05D001619 1.1e-23 114.4 207 40.1
BraSC256t45934Z Brassica rapa HOM05D001108 ORTHO05D001619 1.1e-23 114.4 207 40.1
BcaC01g04207 Brassica carinata HOM05D001108 ORTHO05D001619 1.5e-23 114.0 207 40.1
C05p58940 Brassica napus HOM05D001108 ORTHO05D001619 1.5e-23 114.0 207 40.1
BolC5t34547H Brassica oleracea HOM05D001108 ORTHO05D001619 1.5e-23 114.0 207 40.1
AUR62030508 Chenopodium quinoa HOM05D001108 ORTHO05D001619 1.5e-23 114.0 215 38.1
Nitab4.5_0002024g0030 Nicotiana tabacum HOM05D001108 ORTHO05D001619 1.5e-23 114.0 222 38.3
Carub.0003s0805 Capsella rubella HOM05D001108 ORTHO05D001619 1.9e-23 113.6 214 38.3
BcaC05g29628 Brassica carinata HOM05D001108 ORTHO05D001619 3.2e-23 112.8 207 39.6
CAN.G15.10 Capsicum annuum HOM05D001108 ORTHO05D001619 3.2e-23 112.8 239 37.2
Nitab4.5_0005335g0010 Nicotiana tabacum HOM05D001108 ORTHO05D001619 3.2e-23 112.8 215 39.1
AL3G19950 Arabidopsis lyrata HOM05D001108 ORTHO05D001619 4.2e-23 112.5 214 38.3
TAR369G0635 Trochodendron aralioides HOM05D001108 ORTHO05D001619 4.2e-23 112.5 208 38.9
AT3G08947 Arabidopsis thaliana HOM05D001108 ORTHO05D001619 5.5e-23 112.1 214 37.9
Cpa.g.sc120.38 Carica papaya HOM05D001108 ORTHO05D001619 5.5e-23 112.1 190 40.5
AUR62030785 Chenopodium quinoa HOM05D001108 ORTHO05D001619 5.5e-23 112.1 215 37.7
Ciclev10011045m.g Citrus clementina HOM05D001108 ORTHO05D001619 7.2e-23 111.7 214 38.8
Thhalv10020035m.g Eutrema salsugineum HOM05D001108 ORTHO05D001619 7.2e-23 111.7 214 38.3
Thhalv10020036m.g Eutrema salsugineum HOM05D001108 ORTHO05D001619 7.2e-23 111.7 214 38.3
MBI03_g21446_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D001619 7.2e-23 111.7 208 38.0
MD04G1163100 Malus domestica HOM05D001108 ORTHO05D001619 9.4e-23 111.3 211 36.5
TWI74G0418 Tripterygium wilfordii HOM05D001108 ORTHO05D001619 9.4e-23 111.3 206 38.8
MD12G1176600 Malus domestica HOM05D001108 ORTHO05D001619 1.2e-22 110.9 219 36.5
Aa31LG1G23200 Aethionema arabicum HOM05D001108 ORTHO05D001619 1.6e-22 110.5 207 37.7
PSO349G0295 Papaver somniferum HOM05D001108 ORTHO05D001619 1.6e-22 110.5 184 42.9
GSVIVG01030311001 Vitis vinifera HOM05D001108 ORTHO05D001619 2.1e-22 110.2 208 38.9
CDE12G0183 Ceratophyllum demersum HOM05D001497 ORTHO05D001619 2.7e-22 109.8 214 36.0
Nitab4.5_0009553g0010 Nicotiana tabacum HOM05D001108 ORTHO05D001619 3.6e-22 109.4 239 36.8
TAR633G1035 Trochodendron aralioides HOM05D001108 ORTHO05D001619 3.6e-22 109.4 208 39.4
CARHR083280 Cardamine hirsuta HOM05D001108 ORTHO05D001619 6.1e-22 108.6 214 36.9
Cfa017147 Carpinus fangiana HOM05D001108 ORTHO05D001619 6.1e-22 108.6 206 37.9
Os05g0353400 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D001619 6.1e-22 108.6 208 38.0
PSO017G5632 Papaver somniferum HOM05D001108 ORTHO05D001619 6.1e-22 108.6 184 42.4
Ah.02g115570 Amaranthus hybridus HOM05D001108 ORTHO05D001619 8.0e-22 108.2 215 37.2
EL10Ac5g12515 Beta vulgaris HOM05D001108 ORTHO05D001619 8.0e-22 108.2 205 37.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 8.0e-22 108.2 206 37.4
SMO245G0025 Selaginella moellendorffii HOM05D001108 ORTHO05D001619 8.0e-22 108.2 212 35.8
SMO301G0072 Selaginella moellendorffii HOM05D001108 ORTHO05D001619 8.0e-22 108.2 212 35.8
TWI77G0017 Tripterygium wilfordii HOM05D001108 ORTHO05D001619 8.0e-22 108.2 183 41.0
Carub.0003s0806 Capsella rubella HOM05D001108 ORTHO05D001619 1.0e-21 107.8 218 36.7
Prupe.6G282600 Prunus persica HOM05D001108 ORTHO05D001619 1.0e-21 107.8 206 38.3
Manes.08G095300 Manihot esculenta HOM05D001108 ORTHO05D001619 1.4e-21 107.5 206 36.9
Gorai.012G117900 Gossypium raimondii HOM05D001108 ORTHO05D001619 1.8e-21 107.1 207 38.6
Potri.006G103300 Populus trichocarpa HOM05D001108 ORTHO05D001619 1.8e-21 107.1 215 35.8
Hund10948 Selenicereus undatus HOM05D001108 ORTHO05D001619 1.8e-21 107.1 214 36.9
Zm00001eb286470 Zea mays HOM05D001108 ORTHO05D001619 1.8e-21 107.1 208 38.0
Thecc.05G009600 Theobroma cacao HOM05D001108 ORTHO05D001619 2.3e-21 106.7 208 38.0
COL.COLO4_14485 Corchorus olitorius HOM05D001108 ORTHO05D001619 3.0e-21 106.3 208 38.5
Gohir.A04G094700 Gossypium hirsutum HOM05D001108 ORTHO05D001619 3.0e-21 106.3 207 38.2
Lj2C69T17 Lonicera japonica HOM05D001108 ORTHO05D001619 3.0e-21 106.3 183 38.8
QL07p034255 Quercus lobata HOM05D001108 ORTHO05D001619 4.0e-21 105.9 214 35.0
Sabra06G0080100 Salix brachista HOM05D001108 ORTHO05D001619 4.0e-21 105.9 215 35.8
Ah.02g115530 Amaranthus hybridus HOM05D001108 ORTHO05D001619 5.2e-21 105.5 205 38.0
TAR623G0556 Trochodendron aralioides HOM05D001108 ORTHO05D001619 5.2e-21 105.5 207 38.6
Aa31LG1G23160 Aethionema arabicum HOM05D001108 ORTHO05D001619 6.8e-21 105.1 226 35.0
Gohir.D04G134400 Gossypium hirsutum HOM05D001108 ORTHO05D001619 8.8e-21 104.8 207 38.2
Solyc09g005010.4 Solanum lycopersicum HOM05D001108 ORTHO05D001619 8.8e-21 104.8 179 41.3
Duzib106G1647 Durio zibethinus HOM05D001108 ORTHO05D001619 1.5e-20 104.0 213 38.0
Duzib128G0688 Durio zibethinus HOM05D001108 ORTHO05D001619 1.5e-20 104.0 207 38.6
SEGI_03983 Sequoiadendron giganteum HOM05D001108 ORTHO05D001619 1.5e-20 104.0 208 36.1
Eucgr.A00600 Eucalyptus grandis HOM05D001108 ORTHO05D001619 2.0e-20 103.6 215 34.9
Manes.09G109600 Manihot esculenta HOM05D001108 ORTHO05D001619 3.4e-20 102.8 214 36.9
SEGI_10469 Sequoiadendron giganteum HOM05D001108 ORTHO05D001619 3.4e-20 102.8 185 39.5
CSS0028602 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D001619 5.7e-20 102.1 208 38.0
Potri.016G123600 Populus trichocarpa HOM05D001108 ORTHO05D001619 7.5e-20 101.7 216 36.6
PGR031G3730 Punica granatum HOM05D001108 ORTHO05D001619 7.5e-20 101.7 212 37.3
RcHm_v2.0_Chr3g0462271 Rosa chinensis HOM05D001108 ORTHO05D001619 7.5e-20 101.7 213 37.1
Pp3c11_26710 Physcomitrium patens HOM05D001108 ORTHO05D001619 9.8e-20 101.3 187 36.9
Atru.chr8.2301 Acer truncatum HOM05D001108 ORTHO05D001619 1.7e-19 100.5 184 38.6
Sabra16G0118200 Salix brachista HOM05D001108 ORTHO05D001619 1.7e-19 100.5 216 36.1
Sabra16G0118400 Salix brachista HOM05D001108 ORTHO05D001619 1.7e-19 100.5 216 36.1
Zm00001eb351190 Zea mays HOM05D001108 ORTHO05D001619 1.7e-19 100.5 183 40.4
Duzib093G2012 Durio zibethinus HOM05D001108 ORTHO05D001619 1.1e-18 97.8 208 37.0
SHI12862 Sapria himalayana HOM05D001108 ORTHO05D002426 1.1e-18 97.8 183 38.3
FAN05G0872 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.8e-18 97.1 206 36.9
FAN05G3846 Fragaria x ananassa HOM05D001108 ORTHO05D001619 3.1e-18 96.3 206 36.9
FAN09G4676 Fragaria x ananassa HOM05D001108 ORTHO05D001619 3.1e-18 96.3 206 36.9
FvH4_6g10970 Fragaria vesca HOM05D001108 ORTHO05D001619 4.1e-18 95.9 206 36.9
FAN14G3858 Fragaria x ananassa HOM05D001497 ORTHO05D001619 4.1e-18 95.9 206 36.9
SMO301G0082 Selaginella moellendorffii HOM05D001108 ORTHO05D001619 5.4e-18 95.5 235 32.3
ATR0565G001 Amborella trichopoda HOM05D001108 ORTHO05D001619 7.0e-18 95.1 215 35.3
FAN02G0123 Fragaria x ananassa HOM05D001108 ORTHO05D001619 7.0e-18 95.1 206 36.4
QL07p005459 Quercus lobata HOM05D001108 ORTHO05D001619 1.6e-17 94.0 207 33.8
HPP92_025105 Vanilla planifolia HOM05D001108 ORTHO05D001619 1.6e-17 94.0 238 33.6
HPP92_012022 Vanilla planifolia HOM05D001108 ORTHO05D001619 3.5e-17 92.8 190 35.8
SGA_v2.0_scaffold55G19788 Striga asiatica HOM05D001108 ORTHO05D001619 1.3e-16 90.9 190 34.7
HanXRQChr04g0096111 Helianthus annuus HOM05D001108 ORTHO05D001619 6.5e-16 88.6 183 35.5
Cfa016211 Carpinus fangiana HOM05D001108 ORTHO05D001619 1.5e-15 87.4 186 36.6
Haze_00234 Corylus avellana HOM05D001108 ORTHO05D001619 1.5e-15 87.4 186 36.6
Nitab4.5_0000015g0270 Nicotiana tabacum HOM05D001108 ORTHO05D001619 1.9e-15 87.0 208 30.8
Solyc06g052030.3 Solanum lycopersicum HOM05D001108 ORTHO05D001619 1.9e-15 87.0 184 34.2
Solyc03g082940.3 Solanum lycopersicum HOM05D001108 ORTHO05D001619 2.5e-15 86.7 209 33.0
CAN.G481.34 Capsicum annuum HOM05D001108 ORTHO05D001619 3.2e-15 86.3 209 33.0
PGSC0003DMG400019597 Solanum tuberosum HOM05D001108 ORTHO05D001619 3.2e-15 86.3 184 33.7
HanXRQChr17g0553301 Helianthus annuus HOM05D001108 ORTHO05D001619 4.2e-15 85.9 128 44.5
Sc13g0010010 Simmondsia chinensis HOM05D001108 ORTHO05D001619 4.2e-15 85.9 209 33.0
Ah.07g205420 Amaranthus hybridus HOM05D001108 ORTHO05D001619 5.5e-15 85.5 189 33.3
SalBow2G2478 Salvia bowleyana HOM05D001108 ORTHO05D001619 5.5e-15 85.5 209 31.6
ECA233G3887 Erigeron canadensis HOM05D001108 ORTHO05D001619 7.2e-15 85.1 219 32.0
Nitab4.5_0000444g0220 Nicotiana tabacum HOM05D001108 ORTHO05D001619 7.2e-15 85.1 134 42.5
Nitab4.5_0014900g0010 Nicotiana tabacum HOM05D001108 ORTHO05D001619 7.2e-15 85.1 209 32.1
Peaxi162Scf00740g00229 Petunia axillaris HOM05D001108 ORTHO05D001619 7.2e-15 85.1 209 32.1
Sopen03g022750 Solanum pennellii HOM05D001108 ORTHO05D001619 7.2e-15 85.1 209 32.5
PGSC0003DMG400018525 Solanum tuberosum HOM05D001108 ORTHO05D001619 7.2e-15 85.1 209 33.5
AUR62006069 Chenopodium quinoa HOM05D001108 ORTHO05D001619 9.5e-15 84.7 185 34.6
AUR62035557 Chenopodium quinoa HOM05D001108 ORTHO05D001619 9.5e-15 84.7 185 34.6
ECA233G4864 Erigeron canadensis HOM05D001108 ORTHO05D001619 9.5e-15 84.7 219 32.0
Sopen06g018080 Solanum pennellii HOM05D001108 ORTHO05D001619 9.5e-15 84.7 184 33.2
CSS0007816 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D001619 1.2e-14 84.3 209 32.5
Nitab4.5_0000548g0020 Nicotiana tabacum HOM05D001108 ORTHO05D001619 1.2e-14 84.3 185 33.5
Gohir.D12G249300 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.6e-14 84.0 185 35.7
Gorai.008G267400 Gossypium raimondii HOM05D001108 ORTHO05D001619 1.6e-14 84.0 185 35.7
Ah.13g070420 Amaranthus hybridus HOM05D001108 ORTHO05D001619 2.1e-14 83.6 185 33.0
Cc02_g01310 Coffea canephora HOM05D001108 ORTHO05D001619 2.1e-14 83.6 190 31.6
Hund21014 Selenicereus undatus HOM05D001108 ORTHO05D001619 2.1e-14 83.6 185 34.1
Duzib205G0514 Durio zibethinus HOM05D001108 ORTHO05D001619 2.8e-14 83.2 185 35.1
Duzib205G1706 Durio zibethinus HOM05D001108 ORTHO05D001619 2.8e-14 83.2 185 35.1
Peaxi162Scf00075g00013 Petunia axillaris HOM05D001108 ORTHO05D001619 2.8e-14 83.2 209 32.1
vmacro06399 Vaccinium macrocarpon HOM05D001108 ORTHO05D001619 2.8e-14 83.2 209 32.5
Lj3A899T65 Lonicera japonica HOM05D001108 ORTHO05D001619 3.6e-14 82.8 210 33.8
Lj3P898T14 Lonicera japonica HOM05D001108 ORTHO05D001619 3.6e-14 82.8 209 32.5
MBI07_g12795_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D001619 3.6e-14 82.8 192 34.4
Cc02_g01330 Coffea canephora HOM05D001108 ORTHO05D001619 4.7e-14 82.4 190 32.1
COL.COLO4_16798 Corchorus olitorius HOM05D001108 ORTHO05D001619 4.7e-14 82.4 185 35.7
SGA_v2.0_scaffold192G40525 Striga asiatica HOM05D001108 ORTHO05D001619 4.7e-14 82.4 209 32.1
Duzib084G0676 Durio zibethinus HOM05D001108 ORTHO05D001619 6.1e-14 82.0 185 34.6
HanXRQChr08g0225111 Helianthus annuus HOM05D001108 ORTHO05D001619 6.1e-14 82.0 214 31.8
Peaxi162Scf00618g00316 Petunia axillaris HOM05D001108 ORTHO05D001619 6.1e-14 82.0 211 31.3
arahy.Tifrunner.gnm1.ann1.4S3PH7 Arachis hypogaea HOM05D001108 ORTHO05D001619 8.0e-14 81.6 185 33.5
Nitab4.5_0001717g0020 Nicotiana tabacum HOM05D001108 ORTHO05D001619 8.0e-14 81.6 208 30.8
COL.COLO4_20425 Corchorus olitorius HOM05D001108 ORTHO05D001619 1.0e-13 81.3 187 34.8
Gohir.A12G248500 Gossypium hirsutum HOM05D001108 ORTHO05D001619 1.0e-13 81.3 185 35.1
Hund11643 Selenicereus undatus HOM05D001108 ORTHO05D001619 1.0e-13 81.3 185 33.5
MSTRG.8642 Avicennia marina HOM05D001108 ORTHO05D001619 1.8e-13 80.5 209 31.6
RcHm_v2.0_Chr3g0462121 Rosa chinensis HOM05D001108 ORTHO05D001619 1.8e-13 80.5 232 30.6
Duzib084G1392 Durio zibethinus HOM05D001108 ORTHO05D001619 2.3e-13 80.1 185 34.6
HanXRQChr04g0111491 Helianthus annuus HOM05D001108 ORTHO05D001619 2.3e-13 80.1 184 33.7
Gohir.A09G185100 Gossypium hirsutum HOM05D001108 ORTHO05D001619 3.0e-13 79.7 184 33.2
Rhsim03G0211000 Rhododendron simsii HOM05D001108 ORTHO05D001619 3.0e-13 79.7 208 30.3
Thecc.03G201700 Theobroma cacao HOM05D001108 ORTHO05D001619 3.0e-13 79.7 185 34.6
Gohir.D09G180000 Gossypium hirsutum HOM05D001108 ORTHO05D001619 6.8e-13 78.6 185 34.1
Gorai.006G202000 Gossypium raimondii HOM05D001108 ORTHO05D001619 6.8e-13 78.6 185 34.1
CDE06G0643 Ceratophyllum demersum HOM05D001108 ORTHO05D001619 8.8e-13 78.2 214 31.3
FAN14G4655 Fragaria x ananassa HOM05D001108 ORTHO05D001619 1.5e-12 77.4 201 33.8
Gohir.D12G249200 Gossypium hirsutum HOM05D001108 ORTHO05D001619 2.6e-12 76.6 182 35.2
Lsat_1_v5_gn_0_44640 Lactuca sativa HOM05D001108 ORTHO05D001619 2.6e-12 76.6 185 34.1
Lsat_1_v5_gn_9_49160 Lactuca sativa HOM05D001108 ORTHO05D001619 2.6e-12 76.6 185 34.1
FvH4_6g10890 Fragaria vesca HOM05D001108 ORTHO05D001619 4.4e-12 75.9 201 33.8
FAN09G0725 Fragaria x ananassa HOM05D001108 ORTHO05D001619 4.4e-12 75.9 232 31.9
arahy.Tifrunner.gnm1.ann1.IA3QS0 Arachis hypogaea HOM05D001108 ORTHO05D001619 2.8e-11 73.2 133 38.3


User provided reference genes

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