Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-166 590.1 323 100.0
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-166 590.1 323 100.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.0e-130 469.5 330 83.3
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 9.1e-123 444.1 328 82.3
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 5.9e-82 308.5 333 56.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.2e-76 290.0 336 60.7
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 7.5e-69 265.0 328 51.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 7.5e-69 265.0 328 51.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 8.6e-57 224.9 378 48.7
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 4.4e-53 212.6 349 45.8
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.8e-53 212.2 245 53.1
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 7.6e-53 211.8 357 43.7
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.2e-52 210.3 393 41.7
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 4.9e-52 209.1 346 48.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.9e-51 207.2 345 43.8
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.6e-50 204.1 393 46.1
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.6e-50 204.1 408 43.4
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 6.0e-50 202.2 347 45.2
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.3e-49 200.3 348 44.8
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.1e-49 199.1 342 48.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.9e-48 197.2 397 46.3
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 7.3e-48 195.3 392 42.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 7.3e-48 195.3 365 46.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 8.1e-47 191.8 327 43.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.1e-46 189.9 396 39.9
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.2e-45 188.0 384 45.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.4e-45 186.4 337 41.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.4e-45 186.4 337 41.2
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 9.9e-45 184.9 382 39.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 2.9e-44 183.3 419 40.8
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.8e-44 183.0 368 40.5
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.4e-44 182.2 405 41.5
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.1e-43 181.4 380 44.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-43 181.4 395 43.3
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.1e-43 181.4 342 45.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.4e-43 181.0 388 44.1
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.4e-43 180.3 399 39.3
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.4e-43 180.3 399 39.3
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.6e-42 177.6 391 40.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.1e-42 177.2 390 39.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.1e-42 177.2 391 40.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.1e-42 177.2 332 45.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.5e-42 176.4 403 39.2
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 3.5e-42 176.4 390 36.9
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 6.0e-42 175.6 367 38.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.3e-41 174.5 399 44.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.7e-41 174.1 332 44.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.3e-41 173.7 322 40.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.5e-40 171.0 375 37.3
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.5e-40 171.0 377 36.6
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.5e-40 170.2 389 41.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.3e-40 169.9 321 47.4
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.3e-40 169.5 381 39.1
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.3e-40 169.5 381 39.1
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 9.6e-40 168.3 413 37.5
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.3e-39 167.9 382 43.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.8e-39 166.8 356 39.6
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 3.6e-39 166.4 402 36.1
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 6.2e-39 165.6 418 35.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.2e-39 165.6 378 43.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 8.1e-39 165.2 361 44.3
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-38 164.9 343 44.9
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.4e-38 163.7 411 39.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-38 162.9 344 44.8
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 6.9e-38 162.2 373 37.8
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.0e-38 161.8 346 44.8
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-37 161.4 402 40.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-37 161.4 358 44.1
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.2e-37 161.4 385 42.9
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.0e-37 160.6 388 41.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.6e-37 160.2 406 40.6
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.4e-37 159.8 344 44.8
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 4.5e-37 159.5 406 34.7
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 4.5e-37 159.5 309 41.1
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.6e-37 158.7 409 40.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.6e-37 158.7 412 39.1
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.9e-37 158.3 354 38.7
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 9.9e-37 158.3 410 40.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.7e-36 157.5 371 43.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.7e-36 157.5 332 37.3
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.4e-36 155.2 396 36.6
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 8.4e-36 155.2 399 38.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-35 154.8 403 35.0
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.4e-35 154.5 282 44.7
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.4e-35 154.5 349 42.1
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 7.1e-35 152.1 408 35.3
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.0e-33 148.3 339 38.6
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.0e-33 148.3 339 38.6
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-33 147.5 353 35.1
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.1e-33 146.0 353 34.3
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.1e-33 146.0 353 34.3
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.9e-32 144.1 353 34.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.5e-32 143.7 401 38.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 4.3e-32 142.9 396 36.4
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 7.4e-32 142.1 357 35.6
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-30 137.9 341 37.5
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.0e-30 136.3 371 35.6
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 5.3e-30 136.0 412 37.4
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.5e-29 134.4 267 39.3
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.0e-29 134.0 262 47.7
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.8e-28 129.8 372 41.1
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.9e-27 127.5 324 37.3
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.4e-27 127.1 362 41.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.3e-27 125.2 223 43.0
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.2e-26 124.8 400 33.2
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 7.9e-26 122.1 187 47.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 8.7e-25 118.6 433 33.5
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.7e-25 118.6 264 43.6
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.9e-24 117.5 354 34.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 3.7e-23 113.2 344 39.2
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 8.2e-23 112.1 331 32.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.1e-22 111.7 262 45.0
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.4e-22 111.3 361 34.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.2e-21 108.2 334 29.0
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.0e-20 105.1 270 40.0
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 4.9e-20 102.8 340 31.2
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 4.9e-20 102.8 254 42.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 6.5e-20 102.4 254 42.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 8.4e-20 102.1 256 34.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.2e-19 100.1 264 37.1
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-18 98.2 209 39.7
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 2.1e-18 97.4 239 35.1
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.7e-18 97.1 266 33.8
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.7e-18 97.1 339 31.0
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.6e-18 96.3 238 45.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 4.6e-18 96.3 297 34.7
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 6.0e-18 95.9 248 35.1
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 6.0e-18 95.9 248 35.1
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 6.0e-18 95.9 248 35.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 7.9e-18 95.5 246 35.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 3.9e-17 93.2 248 34.3
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 3.9e-17 93.2 260 41.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.5e-16 91.3 266 38.7
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 7.4e-16 89.0 369 28.2
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.6e-15 87.8 356 30.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 6.3e-15 85.9 102 50.0
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.1e-14 85.1 249 36.1
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-14 84.3 248 40.3
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-14 84.0 241 32.8
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 5.3e-14 82.8 249 35.7
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 2.6e-13 80.5 237 33.8
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.6e-13 80.5 262 29.4
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 4.5e-13 79.7 335 28.7
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 4.5e-13 79.7 236 32.6
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-12 78.6 290 27.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.8e-12 76.6 184 46.2
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 3.8e-12 76.6 318 29.2
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 2.7e-10 70.5 253 37.2
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.9e-09 66.6 146 40.4
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.7e-08 62.8 128 41.4
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.2e-07 60.8 152 32.2
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.4e-06 57.4 271 28.4


User provided reference genes

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