Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.5e-139 498.8 261 100.0
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 1.5e-112 409.8 264 84.8
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 9.3e-94 347.4 192 92.7
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 2.4e-89 332.8 246 73.2
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.2e-88 330.5 272 70.2
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 1.5e-88 330.1 266 70.7
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.5e-88 330.1 262 71.0
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 5.9e-88 328.2 203 83.7
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 7.6e-88 327.8 269 70.3
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 7.6e-88 327.8 226 76.5
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 1.7e-87 326.6 274 69.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 2.2e-87 326.2 262 69.8
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.2e-87 326.2 282 68.1
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.2e-87 326.2 282 67.4
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 5.0e-87 325.1 191 87.4
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 6.5e-87 324.7 273 68.5
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 6.5e-87 324.7 259 69.5
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 8.4e-87 324.3 193 85.5
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 8.4e-87 324.3 200 85.5
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.1e-86 323.9 238 73.1
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 1.1e-86 323.9 257 71.2
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.1e-86 323.9 282 67.0
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 1.9e-86 323.2 199 83.4
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.9e-86 323.2 219 78.5
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 1.9e-86 323.2 199 84.9
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.5e-86 322.8 225 76.9
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.5e-86 322.8 253 71.5
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.2e-86 322.4 216 79.2
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 4.2e-86 322.0 203 80.8
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 4.2e-86 322.0 200 84.5
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 4.2e-86 322.0 194 87.1
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 4.2e-86 322.0 271 67.5
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 5.5e-86 321.6 277 69.0
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 5.5e-86 321.6 190 84.7
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.3e-86 320.9 253 71.1
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.2e-85 320.5 256 70.3
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.2e-85 320.5 217 77.0
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.6e-85 320.1 263 67.3
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.6e-85 320.1 263 68.1
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 2.1e-85 319.7 264 68.6
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 2.7e-85 319.3 252 71.8
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 2.7e-85 319.3 200 83.0
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 4.6e-85 318.5 274 69.0
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 6.1e-85 318.2 260 68.8
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 7.9e-85 317.8 268 68.7
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 1.0e-84 317.4 251 69.7
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.0e-84 317.4 256 68.8
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.0e-84 317.4 258 68.6
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.3e-84 317.0 200 82.5
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.3e-84 317.0 263 67.7
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 1.3e-84 317.0 260 68.8
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.8e-84 316.6 268 67.9
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.8e-84 316.6 239 72.8
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.3e-84 316.2 253 69.2
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 2.3e-84 316.2 199 81.9
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 3.0e-84 315.8 199 81.9
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 3.9e-84 315.5 249 70.3
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 5.1e-84 315.1 243 69.1
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 6.7e-84 314.7 243 68.7
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.1e-83 313.9 188 85.6
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.1e-83 313.9 269 66.9
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.1e-83 313.9 269 67.3
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 1.1e-83 313.9 230 73.9
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.5e-83 313.5 266 68.4
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.9e-83 313.2 271 64.9
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.9e-83 313.2 266 66.9
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.5e-83 312.8 216 75.9
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 3.3e-83 312.4 267 65.2
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 3.3e-83 312.4 216 74.5
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 3.3e-83 312.4 198 81.3
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 3.3e-83 312.4 200 82.0
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 4.3e-83 312.0 216 74.5
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 4.3e-83 312.0 216 74.5
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 4.3e-83 312.0 232 70.7
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 7.4e-83 311.2 200 81.0
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 7.4e-83 311.2 265 68.3
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.6e-82 310.1 233 69.1
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.8e-82 309.3 241 68.0
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 4.8e-82 308.5 204 81.9
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 6.3e-82 308.1 216 74.5
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 6.3e-82 308.1 252 66.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.1e-81 307.4 216 74.5
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.8e-81 306.6 219 74.9
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 2.4e-81 306.2 188 82.4
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 3.1e-81 305.8 241 66.8
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.1e-81 305.8 268 65.7
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 5.3e-81 305.1 241 66.8
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 9.0e-81 304.3 192 80.7
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 9.0e-81 304.3 243 68.7
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.5e-80 303.5 260 63.1
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.0e-80 303.1 268 65.7
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 2.0e-80 303.1 276 67.0
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 2.6e-80 302.8 274 66.1
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 5.9e-80 301.6 211 76.3
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.9e-79 299.3 188 80.9
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 5.0e-79 298.5 194 77.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 3.2e-78 295.8 194 76.8
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 7.9e-77 291.2 259 64.9
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 4.5e-72 275.4 226 61.9
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 6.1e-69 265.0 266 61.3
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.3e-68 263.1 201 73.1
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 6.7e-68 261.5 217 66.4
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 1.1e-65 254.2 179 75.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 7.0e-65 251.5 225 57.3
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.6e-64 250.4 196 62.8
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.0e-63 247.7 214 59.8
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 5.5e-54 215.3 191 67.0
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 7.2e-54 214.9 198 61.6
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.1e-53 213.4 253 53.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 4.7e-53 212.2 190 65.8
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 5.0e-47 192.2 210 49.0
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.9e-46 190.3 182 60.4
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 4.2e-46 189.1 205 49.8
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 3.6e-45 186.0 110 82.7
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 3.4e-43 179.5 128 71.9
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.1e-41 172.6 110 73.6
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 2.1e-37 160.2 205 42.4
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.8e-27 125.6 139 57.6
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 7.0e-25 118.6 89 69.7
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.4e-17 94.4 73 68.5
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 1.7e-15 87.4 48 85.4
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.5e-14 84.3 95 55.8
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 1.4e-09 67.8 44 72.7
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 9.2e-09 65.1 44 70.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.7e-08 63.5 67 56.7


User provided reference genes

Program Settings